Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0229.Seq
         (901 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34980.1 68417.m04959 subtilase family protein similar to SBT...    28   9.7  
At4g11690.1 68417.m01867 pentatricopeptide (PPR) repeat-containi...    28   9.7  

>At4g34980.1 68417.m04959 subtilase family protein similar to SBT1,
           a subtilase from tomato plants GI:1771160 from
           [Lycopersicon esculentum]
          Length = 764

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -2

Query: 798 SVYSLDLIKGFCDFGLFG*KMS*FNKNLTRILTKY*RLQFAIRPFQXRNCWERAIGAGLF 619
           S Y  D+I G  D G++  + S  + NL  I  ++  +  +   F  RNC  + IGA  F
Sbjct: 119 SDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGARFSPRNCNRKIIGARFF 178

Query: 618 A 616
           A
Sbjct: 179 A 179


>At4g11690.1 68417.m01867 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 566

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 849 FNSGLLFXNWNNTSTLISVYSLD-LIKGFCDFG 754
           FN    F N N +  ++ VYS   LIKG C+ G
Sbjct: 145 FNQWWSFFNENKSKVVLDVYSFGILIKGCCEAG 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,381
Number of Sequences: 28952
Number of extensions: 380995
Number of successful extensions: 910
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)