Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0222.Seq
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43930.1 68415.m05460 protein kinase family protein contains ...    27   4.9  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    26   6.4  
At4g10890.1 68417.m01772 expressed protein                             26   8.5  
At3g62400.2 68416.m07010 expressed protein cytochrome c oxidase ...    26   8.5  
At3g62400.1 68416.m07009 expressed protein cytochrome c oxidase ...    26   8.5  
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha...    26   8.5  
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    26   8.5  

>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 250 EPDHILLFHARNIQAAFLARFEHSNLFK 333
           EP  +LL   R     F + FEH  LFK
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFK 90


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 146 NXSESICQRCFHQSRTKXRGSKAIRY 69
           N    +C RCF  ++T+    K++RY
Sbjct: 124 NNELHVCARCFGPAKTRCSRCKSVRY 149


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 155 RKTNXSESICQRCFHQS-RTKXRGSKAIRYRPSSNRKYVI 39
           ++T     +C RC+H S R K R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At3g62400.2 68416.m07010 expressed protein cytochrome c oxidase
           subunit 5c - Oryza sativa, EMBL:AB027123
          Length = 86

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 167 ISPLTSQYECXQLSLLIITSEF 232
           +SPL S++EC  L+L ++ S F
Sbjct: 20  LSPLKSEWECLSLTLNVVGSIF 41


>At3g62400.1 68416.m07009 expressed protein cytochrome c oxidase
           subunit 5c - Oryza sativa, EMBL:AB027123
          Length = 86

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 167 ISPLTSQYECXQLSLLIITSEF 232
           +SPL S++EC  L+L ++ S F
Sbjct: 20  LSPLKSEWECLSLTLNVVGSIF 41


>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
           chain-related similar to SP|Q61704 Inter-alpha-trypsin
           inhibitor heavy chain H3 precursor {Mus musculus};
           contains Pfam profile PF00092: von Willebrand factor
           type A domain
          Length = 754

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 191 RIATLEVKFLDRRKTNXSESICQRCFHQSRTKXRGSKAIRY 69
           +I+  E  +L       +E +C+ C HQ + K R +  +R+
Sbjct: 225 KISKREKIYLSVNAGTGTEVLCKGCSHQLKEKLRSAGKLRF 265


>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 212 IGITGXIRIATLEVKFLDRRKTNXSESICQRCFH 111
           + I G +++ ++ V+ LD+      E +C+ C H
Sbjct: 640 VEIGGHLQVCSIMVENLDKEGVMLIEMLCEECSH 673


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,597,360
Number of Sequences: 28952
Number of extensions: 103705
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)