Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0215.Seq
(900 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 42 7e-04
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 41 0.001
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 40 0.003
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 38 0.012
At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat... 36 0.028
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 36 0.037
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 35 0.064
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 35 0.084
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 33 0.34
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 32 0.45
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 32 0.60
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 32 0.60
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 31 0.79
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 31 1.0
At1g78810.2 68414.m09186 expressed protein 29 5.6
At1g78810.1 68414.m09185 expressed protein 29 5.6
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 28 7.3
At4g34590.1 68417.m04914 bZIP transcription factor family protei... 28 9.7
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 28 9.7
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1
Query: 154 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCG 249
L DLD +L CP+C E T IFQC+ GH CG
Sbjct: 30 LLDLD-ILDCPICCEALTSPIFQCDNGHLACG 60
>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 348
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 136 ENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 246
E + +L DLD +L CPVC+E T FQC++GH VC
Sbjct: 29 ETRSAKLLDLD-VLDCPVCFEPLTIPTFQCDDGHIVC 64
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 154 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 246
L DL+ +L CP+CYE T IFQC+ GH C
Sbjct: 43 LMDLE-ILDCPICYEAFTIPIFQCDNGHLAC 72
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 154 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 246
L DLD +L CP+CY+ +FQC GH C
Sbjct: 37 LTDLD-ILDCPICYQALKIPVFQCGNGHLAC 66
>At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative
similar to SIAH2 protein [Brassica napus var. napus]
GI:7657878; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 329
Score = 36.3 bits (80), Expect = 0.028
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 154 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 246
LP+ N+L+CP C++ IFQCN GH C
Sbjct: 78 LPN-SNVLECPNCFDPLKKPIFQCNNGHLAC 107
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 35.9 bits (79), Expect = 0.037
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 169 NLLQCPVCYEIPTGHIFQCNEGHNVC 246
+LL CP+C T IFQC+ GH C
Sbjct: 40 DLLDCPICCHALTSPIFQCDNGHIAC 65
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 154 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 246
L +LD LL CP+CY I+QC+ GH C
Sbjct: 41 LLELD-LLDCPICYHKLGAPIYQCDNGHIAC 70
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 34.7 bits (76), Expect = 0.084
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 169 NLLQCPVCYEIPTGHIFQCNEGHNVC 246
+LL CP+C T IFQC++GH C
Sbjct: 52 DLLDCPICCNALTIPIFQCDKGHIAC 77
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVCGR*K 258
LL+CPVC + I QC GH +C K
Sbjct: 57 LLECPVCTNLMYPPIHQCPNGHTLCSNCK 85
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
LL+CPVC + I QC GH +C
Sbjct: 54 LLECPVCTNLMYPPIHQCPNGHTLC 78
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 31.9 bits (69), Expect = 0.60
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 169 NLLQCPVCYEIPTGHIFQCNEGHNVC 246
++L CP+C E IFQC+ GH C
Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLAC 134
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 31.9 bits (69), Expect = 0.60
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
LL+CPVC I QC+ GH +C
Sbjct: 60 LLECPVCTNSMYPPIHQCHNGHTLC 84
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 31.5 bits (68), Expect = 0.79
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 134 LKIRLTNCQTWITYFSVQYVMKSLQVIFSNAMKVIMYVADESSAFCLPGMQGTIFWNQEL 313
L + L+NC+ W + + Y +FS +++V D S CLP ++ Q L
Sbjct: 647 LHLDLSNCRHWNPFLEIHYDRVGTDGVFSYKEITVLFVPDLSE--CLPSFD--VWRTQWL 702
Query: 314 CHGRA 328
H +A
Sbjct: 703 AHRKA 707
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
LL+CPVC I QC+ GH +C
Sbjct: 61 LLECPVCTYSMYPPIHQCHNGHTLC 85
>At1g78810.2 68414.m09186 expressed protein
Length = 480
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 345 KLRAFKLGGKVTRGLLASDSSSTPARD-SGSDNAEYLGEDENNDNQNSVVAPNPCKD 512
K+RA K+ + LL D P R G + +ENN+N +S+V + C+D
Sbjct: 408 KIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHMCED 464
>At1g78810.1 68414.m09185 expressed protein
Length = 481
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 345 KLRAFKLGGKVTRGLLASDSSSTPARD-SGSDNAEYLGEDENNDNQNSVVAPNPCKD 512
K+RA K+ + LL D P R G + +ENN+N +S+V + C+D
Sbjct: 408 KIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHMCED 464
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 432 SDNAEYLGEDENNDNQNSVVAPNPCKDFFVASAA 533
S N + +D+NN+N +SV P P D + +S++
Sbjct: 47 SPNRDRSDDDDNNNNHDSVSIPPPIYDGYSSSSS 80
>At4g34590.1 68417.m04914 bZIP transcription factor family protein
similar to common plant regulatory factor 7 GI:9650828
from [Petroselinum crispum]
Length = 159
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +3
Query: 432 SDNAEYLGEDENNDNQNSVVAPNP-----CKDFFV 521
+D E+L NN+N N + NP C DFFV
Sbjct: 103 NDIIEFLDSSNNNNNNNMGMCSNPLVGLECDDFFV 137
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 294 FFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENND 473
FFGT ++A R L+ +KL G++ + +D+ + +SG +++ G+D D
Sbjct: 359 FFGTHDFA--------RYLKEYKLPGRMDQLQKVADTDCSERINSGEEDSSNSGDDYTKD 410
Query: 474 NQ 479
+
Sbjct: 411 GE 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,944,152
Number of Sequences: 28952
Number of extensions: 422922
Number of successful extensions: 1162
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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