BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0214.Seq (886 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 42 7e-04 At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 41 0.001 At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 40 0.003 At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 38 0.012 At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat... 36 0.027 At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 36 0.036 At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 35 0.062 At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 35 0.083 At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 34 0.14 At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 33 0.19 At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 33 0.25 At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 32 0.44 At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 32 0.58 At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 31 1.0 At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 31 1.3 At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 30 2.3 At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 30 2.3 At1g66020.1 68414.m07493 terpene synthase/cyclase family protein... 29 4.1 At1g78810.2 68414.m09186 expressed protein 29 5.4 At1g78810.1 68414.m09185 expressed protein 29 5.4 At4g34590.1 68417.m04914 bZIP transcription factor family protei... 28 9.5 At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 28 9.5 >At5g37910.1 68418.m04567 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 276 Score = 41.5 bits (93), Expect = 7e-04 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = +2 Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCG 250 L DLD +L CP+C E T IFQC+ GH CG Sbjct: 30 LLDLD-ILDCPICCEALTSPIFQCDNGHLACG 60 >At5g62800.1 68418.m07883 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 348 Score = 40.7 bits (91), Expect = 0.001 Identities = 19/37 (51%), Positives = 25/37 (67%) Frame = +2 Query: 137 ENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247 E + +L DLD +L CPVC+E T FQC++GH VC Sbjct: 29 ETRSAKLLDLD-VLDCPVCFEPLTIPTFQCDDGHIVC 64 >At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 286 Score = 39.5 bits (88), Expect = 0.003 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = +2 Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247 L DL+ +L CP+CYE T IFQC+ GH C Sbjct: 43 LMDLE-ILDCPICYEAFTIPIFQCDNGHLAC 72 >At5g37870.1 68418.m04561 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 281 Score = 37.5 bits (83), Expect = 0.012 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247 L DLD +L CP+CY+ +FQC GH C Sbjct: 37 LTDLD-ILDCPICYQALKIPVFQCGNGHLAC 66 >At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative similar to SIAH2 protein [Brassica napus var. napus] GI:7657878; contains Pfam profile PF03145: Seven in absentia protein family Length = 329 Score = 36.3 bits (80), Expect = 0.027 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +2 Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247 LP+ N+L+CP C++ IFQCN GH C Sbjct: 78 LPN-SNVLECPNCFDPLKKPIFQCNNGHLAC 107 >At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 313 Score = 35.9 bits (79), Expect = 0.036 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 170 NLLQCPVCYEIPTGHIFQCNEGHNVC 247 +LL CP+C T IFQC+ GH C Sbjct: 40 DLLDCPICCHALTSPIFQCDNGHIAC 65 >At1g66630.1 68414.m07571 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 303 Score = 35.1 bits (77), Expect = 0.062 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247 L +LD LL CP+CY I+QC+ GH C Sbjct: 41 LLELD-LLDCPICYHKLGAPIYQCDNGHIAC 70 >At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 366 Score = 34.7 bits (76), Expect = 0.083 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 170 NLLQCPVCYEIPTGHIFQCNEGHNVC 247 +LL CP+C T IFQC++GH C Sbjct: 52 DLLDCPICCNALTIPIFQCDKGHIAC 77 >At3g58040.1 68416.m06470 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 308 Score = 33.9 bits (74), Expect = 0.14 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259 LL+CPVC + I QC GH +C K Sbjct: 57 LLECPVCTNLMYPPIHQCPNGHTLCSNCK 85 >At2g41980.1 68415.m05193 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 305 Score = 33.5 bits (73), Expect = 0.19 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259 LL+CPVC + I QC GH +C K Sbjct: 54 LLECPVCTNLMYPPIHQCPNGHTLCSSCK 82 >At3g61790.1 68416.m06933 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 326 Score = 33.1 bits (72), Expect = 0.25 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259 LL+CPVC I QC+ GH +C K Sbjct: 60 LLECPVCTNSMYPPIHQCHNGHTLCSTCK 88 >At4g27880.1 68417.m04002 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 327 Score = 32.3 bits (70), Expect = 0.44 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259 LL+CPVC I QC+ GH +C K Sbjct: 61 LLECPVCTYSMYPPIHQCHNGHTLCSTCK 89 >At5g37930.1 68418.m04569 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 349 Score = 31.9 bits (69), Expect = 0.58 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 170 NLLQCPVCYEIPTGHIFQCNEGHNVC 247 ++L CP+C E IFQC+ GH C Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLAC 134 >At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017 Length = 1340 Score = 31.1 bits (67), Expect = 1.0 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = +3 Query: 135 LKIRLTNCQTWITYFSVQYVMKSLQVIFSNAMKVIMYVAD*SSAFCLPGMQGTIFWNQEL 314 L + L+NC+ W + + Y +FS +++V D S CLP ++ Q L Sbjct: 647 LHLDLSNCRHWNPFLEIHYDRVGTDGVFSYKEITVLFVPDLSE--CLPSFD--VWRTQWL 702 Query: 315 CHGRA 329 H +A Sbjct: 703 AHRKA 707 >At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative (UBP20) identical to ubiquitin-specific protease 20 GI:11993480 [Arabidopsis thaliana] Length = 695 Score = 30.7 bits (66), Expect = 1.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +1 Query: 433 SDNAEYLGEDENNDNQNSVVAPNPCKDFFVASGCKNGNSIRLP 561 S N + +D+NN+N +SV P P D + +S S+ P Sbjct: 47 SPNRDRSDDDDNNNNHDSVSIPPPIYDGYSSSSSDESQSVPSP 89 >At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus angustifolius] GI:1888557, [Hordeum vulgare subsp. vulgare] GI:2564253; contains Pfam profile PF00293: NUDIX domain Length = 227 Score = 29.9 bits (64), Expect = 2.3 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 765 PKSYRKNISMVKKKLCPCLKIFDCQXLNFPKSW 667 P YRKN+ + + PC KIF ++ P +W Sbjct: 59 PVGYRKNVGICL--VSPCRKIFTASKIHIPDTW 89 >At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 448 Score = 29.9 bits (64), Expect = 2.3 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = +1 Query: 505 CKDFFVASGCKNGNSIR----LPGSSFT*PPSLTFILPELLEGRAEXVEYLQS 651 CK +F GCK G + R +P S P L F+ L G E Y+++ Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRN 216 >At1g66020.1 68414.m07493 terpene synthase/cyclase family protein contains Pfam profile: PF01397: Terpene synthase family Length = 598 Score = 29.1 bits (62), Expect = 4.1 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +2 Query: 503 HVRTFSLPLAARMGIPSDFQAARLLNHLR*LSFFQNF*RDEQXALNTFK 649 H RT S PL G P + LNHLR L D+Q ++ FK Sbjct: 12 HFRTNSFPLRKLYGFPLTTFSGTSLNHLR-LKATNTLKGDDQESIRKFK 59 >At1g78810.2 68414.m09186 expressed protein Length = 480 Score = 28.7 bits (61), Expect = 5.4 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +1 Query: 346 KLRAFKLGGKVTRGLLASDSSSTPARD-SGSDNAEYLGEDENNDNQNSVVAPNPCKD 513 K+RA K+ + LL D P R G + +ENN+N +S+V + C+D Sbjct: 408 KIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHMCED 464 >At1g78810.1 68414.m09185 expressed protein Length = 481 Score = 28.7 bits (61), Expect = 5.4 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +1 Query: 346 KLRAFKLGGKVTRGLLASDSSSTPARD-SGSDNAEYLGEDENNDNQNSVVAPNPCKD 513 K+RA K+ + LL D P R G + +ENN+N +S+V + C+D Sbjct: 408 KIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHMCED 464 >At4g34590.1 68417.m04914 bZIP transcription factor family protein similar to common plant regulatory factor 7 GI:9650828 from [Petroselinum crispum] Length = 159 Score = 27.9 bits (59), Expect = 9.5 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%) Frame = +1 Query: 433 SDNAEYLGEDENNDNQNSVVAPNP-----CKDFFV 522 +D E+L NN+N N + NP C DFFV Sbjct: 103 NDIIEFLDSSNNNNNNNMGMCSNPLVGLECDDFFV 137 >At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger family protein / SET domain-containing protein similar to trithorax-like protein 1 [Arabidopsis thaliana] GI:12659210; contains Pfam domain, PF00628: PHD-finger and PF00856: SET domain Length = 1056 Score = 27.9 bits (59), Expect = 9.5 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = +1 Query: 295 FFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENND 474 FFGT ++A R L+ +KL G++ + +D+ + +SG +++ G+D D Sbjct: 359 FFGTHDFA--------RYLKEYKLPGRMDQLQKVADTDCSERINSGEEDSSNSGDDYTKD 410 Query: 475 NQ 480 + Sbjct: 411 GE 412 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,271,789 Number of Sequences: 28952 Number of extensions: 371025 Number of successful extensions: 1052 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1051 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2071520424 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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