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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0214.Seq
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37910.1 68418.m04567 seven in absentia (SINA) family protein...    42   7e-04
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein...    41   0.001
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat...    40   0.003
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein...    38   0.012
At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat...    36   0.027
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat...    36   0.036
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    35   0.062
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    35   0.083
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein...    34   0.14 
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein...    33   0.19 
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein...    33   0.25 
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein...    32   0.44 
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein...    32   0.58 
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    31   1.0  
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ...    31   1.3  
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat...    30   2.3  
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ...    30   2.3  
At1g66020.1 68414.m07493 terpene synthase/cyclase family protein...    29   4.1  
At1g78810.2 68414.m09186 expressed protein                             29   5.4  
At1g78810.1 68414.m09185 expressed protein                             29   5.4  
At4g34590.1 68417.m04914 bZIP transcription factor family protei...    28   9.5  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    28   9.5  

>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 276

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCG 250
           L DLD +L CP+C E  T  IFQC+ GH  CG
Sbjct: 30  LLDLD-ILDCPICCEALTSPIFQCDNGHLACG 60


>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 348

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +2

Query: 137 ENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247
           E +  +L DLD +L CPVC+E  T   FQC++GH VC
Sbjct: 29  ETRSAKLLDLD-VLDCPVCFEPLTIPTFQCDDGHIVC 64


>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 286

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247
           L DL+ +L CP+CYE  T  IFQC+ GH  C
Sbjct: 43  LMDLE-ILDCPICYEAFTIPIFQCDNGHLAC 72


>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 281

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247
           L DLD +L CP+CY+     +FQC  GH  C
Sbjct: 37  LTDLD-ILDCPICYQALKIPVFQCGNGHLAC 66


>At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative
           similar to SIAH2 protein [Brassica napus var. napus]
           GI:7657878; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 329

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247
           LP+  N+L+CP C++     IFQCN GH  C
Sbjct: 78  LPN-SNVLECPNCFDPLKKPIFQCNNGHLAC 107


>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 313

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 170 NLLQCPVCYEIPTGHIFQCNEGHNVC 247
           +LL CP+C    T  IFQC+ GH  C
Sbjct: 40  DLLDCPICCHALTSPIFQCDNGHIAC 65


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVC 247
           L +LD LL CP+CY      I+QC+ GH  C
Sbjct: 41  LLELD-LLDCPICYHKLGAPIYQCDNGHIAC 70


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 170 NLLQCPVCYEIPTGHIFQCNEGHNVC 247
           +LL CP+C    T  IFQC++GH  C
Sbjct: 52  DLLDCPICCNALTIPIFQCDKGHIAC 77


>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 308

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           LL+CPVC  +    I QC  GH +C   K
Sbjct: 57  LLECPVCTNLMYPPIHQCPNGHTLCSNCK 85


>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 305

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           LL+CPVC  +    I QC  GH +C   K
Sbjct: 54  LLECPVCTNLMYPPIHQCPNGHTLCSSCK 82


>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 326

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           LL+CPVC       I QC+ GH +C   K
Sbjct: 60  LLECPVCTNSMYPPIHQCHNGHTLCSTCK 88


>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 327

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 LLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           LL+CPVC       I QC+ GH +C   K
Sbjct: 61  LLECPVCTYSMYPPIHQCHNGHTLCSTCK 89


>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 349

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 170 NLLQCPVCYEIPTGHIFQCNEGHNVC 247
           ++L CP+C E     IFQC+ GH  C
Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLAC 134


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 135 LKIRLTNCQTWITYFSVQYVMKSLQVIFSNAMKVIMYVAD*SSAFCLPGMQGTIFWNQEL 314
           L + L+NC+ W  +  + Y       +FS     +++V D S   CLP     ++  Q L
Sbjct: 647 LHLDLSNCRHWNPFLEIHYDRVGTDGVFSYKEITVLFVPDLSE--CLPSFD--VWRTQWL 702

Query: 315 CHGRA 329
            H +A
Sbjct: 703 AHRKA 707


>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
           (UBP20) identical to ubiquitin-specific protease 20
           GI:11993480 [Arabidopsis thaliana]
          Length = 695

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 433 SDNAEYLGEDENNDNQNSVVAPNPCKDFFVASGCKNGNSIRLP 561
           S N +   +D+NN+N +SV  P P  D + +S      S+  P
Sbjct: 47  SPNRDRSDDDDNNNNHDSVSIPPPIYDGYSSSSSDESQSVPSP 89


>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
           hydrolase, putative similar to diadenosine
           5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
           angustifolius] GI:1888557, [Hordeum vulgare subsp.
           vulgare] GI:2564253; contains Pfam profile PF00293:
           NUDIX domain
          Length = 227

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 765 PKSYRKNISMVKKKLCPCLKIFDCQXLNFPKSW 667
           P  YRKN+ +    + PC KIF    ++ P +W
Sbjct: 59  PVGYRKNVGICL--VSPCRKIFTASKIHIPDTW 89


>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +1

Query: 505 CKDFFVASGCKNGNSIR----LPGSSFT*PPSLTFILPELLEGRAEXVEYLQS 651
           CK +F   GCK G + R    +P S     P L F+   L  G  E   Y+++
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRN 216


>At1g66020.1 68414.m07493 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397: Terpene synthase family
          Length = 598

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 503 HVRTFSLPLAARMGIPSDFQAARLLNHLR*LSFFQNF*RDEQXALNTFK 649
           H RT S PL    G P    +   LNHLR L        D+Q ++  FK
Sbjct: 12  HFRTNSFPLRKLYGFPLTTFSGTSLNHLR-LKATNTLKGDDQESIRKFK 59


>At1g78810.2 68414.m09186 expressed protein
          Length = 480

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 346 KLRAFKLGGKVTRGLLASDSSSTPARD-SGSDNAEYLGEDENNDNQNSVVAPNPCKD 513
           K+RA K+  +    LL  D    P R   G  +      +ENN+N +S+V  + C+D
Sbjct: 408 KIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHMCED 464


>At1g78810.1 68414.m09185 expressed protein
          Length = 481

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 346 KLRAFKLGGKVTRGLLASDSSSTPARD-SGSDNAEYLGEDENNDNQNSVVAPNPCKD 513
           K+RA K+  +    LL  D    P R   G  +      +ENN+N +S+V  + C+D
Sbjct: 408 KIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHMCED 464


>At4g34590.1 68417.m04914 bZIP transcription factor family protein
           similar to common plant regulatory factor 7 GI:9650828
           from [Petroselinum crispum]
          Length = 159

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +1

Query: 433 SDNAEYLGEDENNDNQNSVVAPNP-----CKDFFV 522
           +D  E+L    NN+N N  +  NP     C DFFV
Sbjct: 103 NDIIEFLDSSNNNNNNNMGMCSNPLVGLECDDFFV 137


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +1

Query: 295 FFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENND 474
           FFGT ++A        R L+ +KL G++ +    +D+  +   +SG +++   G+D   D
Sbjct: 359 FFGTHDFA--------RYLKEYKLPGRMDQLQKVADTDCSERINSGEEDSSNSGDDYTKD 410

Query: 475 NQ 480
            +
Sbjct: 411 GE 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,789
Number of Sequences: 28952
Number of extensions: 371025
Number of successful extensions: 1052
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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