Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0211.Seq
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 122 2e-28
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 122 2e-28
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 122 2e-28
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 122 2e-28
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 101 6e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 54 1e-07
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 48 8e-06
At4g27900.2 68417.m04005 expressed protein 32 0.45
At4g27900.1 68417.m04004 expressed protein 32 0.45
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 29 4.2
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 29 4.2
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 4.2
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 7.3
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 27 9.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 122 bits (295), Expect = 2e-28
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EA+PGDNV FNVK + + K + +FT+QVI + +
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKGAANFTSQVIIMNHP-GQIGNGYA 346
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+
Sbjct: 347 PVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEY 406
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PPLGRFAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P G + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKGAANFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 122 bits (295), Expect = 2e-28
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EA+PGDNV FNVK + + K + +FT+QVI + +
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKGAANFTSQVIIMNHP-GQIGNGYA 346
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+
Sbjct: 347 PVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEY 406
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PPLGRFAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P G + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKGAANFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 122 bits (295), Expect = 2e-28
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EA+PGDNV FNVK + + K + +FT+QVI + +
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKGAANFTSQVIIMNHP-GQIGNGYA 346
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+
Sbjct: 347 PVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEY 406
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PPLGRFAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P G + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKGAANFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 122 bits (295), Expect = 2e-28
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EA+PGDNV FNVK + + K + +FT+QVI + +
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKGAANFTSQVIIMNHP-GQIGNGYA 346
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+
Sbjct: 347 PVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEY 406
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PPLGRFAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P G + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKGAANFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 101 bits (241), Expect = 6e-22
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Frame = -3
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++F+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGR
Sbjct: 18 HTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGR 77
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGK 270
FA+RDMRQTV VGVIK+V K+ G K
Sbjct: 78 FAIRDMRQTVGVGVIKSVVKKDPSGAK 104
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -1
Query: 577 NHPGQISNGYTPVLDCHTAHIA 512
NH GQI NGYTPVLDCHT+HIA
Sbjct: 2 NHLGQIKNGYTPVLDCHTSHIA 23
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = -3
Query: 509 QFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 330
+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 455 EIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEG 514
Query: 329 QTVAVGVI 306
+T+AVG +
Sbjct: 515 KTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -3
Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 348
H ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRV 646
Query: 347 AVRDMRQTVAVGVIKAV 297
+R +TVA+G + +
Sbjct: 647 FLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 449 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 449 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 512 LQFAEIKEKVDRRTGKSTEVNPKSI 438
++F + KEK+DR GK E+N K +
Sbjct: 257 MRFPKPKEKIDREGGKPLEINVKKL 281
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
Frame = -3
Query: 536 GLPHCPHC----LQFAEIKEKVD 480
GL HCPHC L A+++EKV+
Sbjct: 820 GLKHCPHCIPLWLSLADLEEKVN 842
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 514 QCGQCGNPRLVCNRLRFDQDG*XSMT*AVKS 606
+CG+ G P L+C + RF G + + +KS
Sbjct: 524 KCGEMGEPALLCEQCRFTVQGFENFSTHLKS 554
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,878
Number of Sequences: 28952
Number of extensions: 307001
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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