Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0206.Seq
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04955.1 68417.m00720 amidohydrolase family protein similar t...    37   0.019
At3g49200.1 68416.m05377 hypothetical protein                          28   6.7  

>At4g04955.1 68417.m00720 amidohydrolase family protein similar to
           SP|P32375 Allantoinase (EC 3.5.2.5) {Saccharomyces
           cerevisiae}; contains Pfam profile PF01979:
           Amidohydrolase family
          Length = 506

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 377 VHICHVARKEEIL-IIKAAKERGVKVTCEVCPHHLFLNSNDI 255
           +HI H++     L +IK AK +G  VT E CPH+L  ++ +I
Sbjct: 288 LHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEI 329



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 835 HGNIVKLPGFIDVHVHVREPG 773
           +G  V +PG IDVHVH+ +PG
Sbjct: 92  YGEAVLMPGLIDVHVHLDDPG 112


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 618 HRALTLANVEA*SNAVRSTIEGLVLGIAQ 704
           HR ++L +++   NA++ T+  +VLG++Q
Sbjct: 266 HRTVSLDDIKLIKNAMKMTVNDVVLGVSQ 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,176
Number of Sequences: 28952
Number of extensions: 356130
Number of successful extensions: 926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)