Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0200.Seq
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    96   2e-20
At3g17740.1 68416.m02264 expressed protein                             31   0.58 
At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain...    28   5.4  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   9.5  
At1g26680.1 68414.m03250 transcriptional factor B3 family protei...    27   9.5  

>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar to
            pre-mRNA splicing factor pre-mRNA splicing factor prp1
            (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 36/74 (48%), Positives = 53/74 (71%)
 Frame = +2

Query: 2    SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
            ++LFW ++K+ K R WF R V + PD+GD WA FYKFEL HG+++ +++V ++C A EP 
Sbjct: 933  AKLFWQDKKVEKARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACEPK 992

Query: 182  HGEYWCKVSKDIVN 223
            HGE W  +SK + N
Sbjct: 993  HGEKWQAISKAVEN 1006



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 29   LNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGEYW 196
            LNK R       K +P   + W    + EL H N+++ E + S+     P  G  W
Sbjct: 844  LNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILW 899


>At3g17740.1 68416.m02264 expressed protein
          Length = 1149

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 14  WTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVK 154
           W +  LNK RE FNR  +  P    AW  F  F+    + Q Q+ V+
Sbjct: 270 WEDEVLNKTRE-FNRVTRERPHDAKAWLAFADFQDKVSSMQSQKGVR 315


>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein similar to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 811

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 14  WTERKLNKCREWFNRTVKIDPDLGDA 91
           WT+ + NK  E +   +K+ PD  +A
Sbjct: 543 WTQNEYNKAAEKYEEAIKVKPDFYEA 568


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 108 NSSYFTATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAPI 242
           NSS F A++S   + S + G PS  T +T +  + +S  G S+ I
Sbjct: 203 NSSLFGASSSAATSTSPLFGAPSSATGATPSFSVASSAPGSSSSI 247


>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 920

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 390 PPCLFLP*SSNAIRLEGWGSRCNYTETLELMSQGG*RIYVWMSMGSSNHLTPG 548
           PP ++L  S +  + E    R  +  ++   S    ++Y+W S  SSN L  G
Sbjct: 705 PPVMYLSLSEHRPKSESSSHRSYFVGSVTASSIKKDKLYLWKSFVSSNGLDKG 757


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,392
Number of Sequences: 28952
Number of extensions: 268362
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)