Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0194.Seq
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    41   0.001
At4g36400.2 68417.m05172 FAD linked oxidase family protein low s...    32   0.48 
At4g36400.1 68417.m05171 FAD linked oxidase family protein low s...    32   0.48 
At1g69360.1 68414.m07960 expressed protein                             30   1.5  
At2g47980.1 68415.m06004 expressed protein                             30   1.9  
At1g34190.1 68414.m04241 no apical meristem (NAM) family protein...    30   1.9  
At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing ...    29   4.5  

>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 231 EEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHG-SAWALLEGLKKQFDP 55
           EE  +    LN  +    + + G+    HG+G  ++ + + E G  A   ++ +KK  DP
Sbjct: 492 EEQRREAERLNHFMVHSALSMDGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKTLDP 551

Query: 54  NGIMNTGTIYP 22
           N IMN G + P
Sbjct: 552 NDIMNPGKLIP 562


>At4g36400.2 68417.m05172 FAD linked oxidase family protein low
           similarity to SP|Q12627 from Kluyveromyces lactis and
           SP|P32891 from Saccharomyces cerevisiae; contains Pfam
           FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
           binding domain PF01565
          Length = 559

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 222 DKYHNPLNKIICEETIRLGGSMVHHHGIG---KHRVHWSKLEHGSAWALLEGLKKQFDPN 52
           DK    +   + E T +  GS+   HG+G    + + +SK       AL+  +KK  DP 
Sbjct: 486 DKLLGLIEPYVYEWTSKHRGSISAEHGLGVMKANEIFYSKSPE--TVALMASIKKLLDPK 543

Query: 51  GIMNTGTIYP 22
           GI+N   + P
Sbjct: 544 GILNPYKVLP 553


>At4g36400.1 68417.m05171 FAD linked oxidase family protein low
           similarity to SP|Q12627 from Kluyveromyces lactis and
           SP|P32891 from Saccharomyces cerevisiae; contains Pfam
           FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
           binding domain PF01565
          Length = 559

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 222 DKYHNPLNKIICEETIRLGGSMVHHHGIG---KHRVHWSKLEHGSAWALLEGLKKQFDPN 52
           DK    +   + E T +  GS+   HG+G    + + +SK       AL+  +KK  DP 
Sbjct: 486 DKLLGLIEPYVYEWTSKHRGSISAEHGLGVMKANEIFYSKSPE--TVALMASIKKLLDPK 543

Query: 51  GIMNTGTIYP 22
           GI+N   + P
Sbjct: 544 GILNPYKVLP 553


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 90  PTRCR--VPVCSSERDVYRYRGGAPSNRRGEW 179
           P +C+  VPV SS RD+Y   G   S+ +G+W
Sbjct: 213 PVQCQDSVPVSSSSRDLYSLYGANISHVQGQW 244


>At2g47980.1 68415.m06004 expressed protein
          Length = 1098

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -3

Query: 718 LKIMXEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIV 548
           L+I+ E     I  +Y  +D  ++     D KC++  + + NPR    T E    ++
Sbjct: 444 LQILREFSTDPILCVYVIDDVWEYMKAMKDWKCIISMLLDQNPRTGSTTDEDSTNLI 500


>At1g34190.1 68414.m04241 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein;
           similar to NAM protein GI:6066595  [Petunia hybrida];
           nam-like protein 9 (GI:21105746)  [Petunia x hybrida];
           NAC1 GI:7716952 [Medicago truncatula]
          Length = 557

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 141 YRGGAPSNRRGEWFLHR*SC*AD-CGTCRFPLPAYS 245
           YRG APS  R +W +H  +   D  G C+ P   Y+
Sbjct: 124 YRGRAPSGERTDWVMHEYTMDEDELGRCKNPQEYYA 159


>At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing
           protein similar to terminal ear1 [Zea mays] GI:3153237,
           SP|P08965 Meiosis protein mei2 {Schizosaccharomyces
           pombe}; contains Pfam profile: PF00076 RNA recognition
           motif (aka RRM, RBD, or RNP domain)
          Length = 282

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 520 PRAGIAGSGQRFPQSLRPSPSQCEGYLQP*RSARIFRRQN 639
           P   +  S Q  PQ   P+PSQ E  L P  S R+F R++
Sbjct: 72  PNPNVYESTQELPQRYSPNPSQ-EMTLPPTSSRRVFGRRS 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,929,731
Number of Sequences: 28952
Number of extensions: 401215
Number of successful extensions: 1183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)