Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0177.Seq
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47500.1 68418.m05865 pectinesterase family protein contains ...    35   0.043
At2g21610.1 68415.m02570 pectinesterase family protein contains ...    31   0.70 
At5g64640.1 68418.m08124 pectinesterase family protein contains ...    30   1.2  
At2g43050.1 68415.m05342 pectinesterase family protein contains ...    30   1.2  
At3g29090.1 68416.m03642 pectinesterase family protein similar t...    29   3.8  
At1g53840.1 68414.m06128 pectinesterase family protein contains ...    29   3.8  
At4g11980.1 68417.m01907 MutT/nudix family protein low similarit...    28   5.0  
At3g46340.1 68416.m05018 leucine-rich repeat protein kinase, put...    27   8.7  

>At5g47500.1 68418.m05865 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 362

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +1

Query: 79  VGPAGTQGVT-----HT---TIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGI 234
           VGP+G + +T     H    ++Q AVD+ I K  NK   I + PG Y+  V VPA    I
Sbjct: 53  VGPSGHKVITVSLNGHAQFRSVQDAVDS-IPKNNNKSITIKIAPGFYREKVVVPATKPYI 111

Query: 235 TLYGTGEN 258
           T  G G +
Sbjct: 112 TFKGAGRD 119


>At2g21610.1 68415.m02570 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 352

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 7   ASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQXAVDAAIIKRTNKRQY-IAVM 183
           +S+T  + A + SP ++      ++    +     + IQ A+++      N + Y I V 
Sbjct: 27  SSITSSSMASSSSPSSIDFSTAILIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVK 86

Query: 184 PGEYQGTVYVPAAPGGITLYGT 249
           PG Y+  V +PA    ITL GT
Sbjct: 87  PGIYREKVVIPAEKPYITLSGT 108


>At5g64640.1 68418.m08124 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 602

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 70  DFVVGPAGTQGVTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGT 249
           D  V   G +   + T+Q AVD+A       +  I +  G Y+ TV VP     +   G 
Sbjct: 288 DVTVCKNGGKDCKYKTVQEAVDSAPDTNRTVKFVIRIREGVYEETVRVPFEKKNVVFIGD 347

Query: 250 G 252
           G
Sbjct: 348 G 348


>At2g43050.1 68415.m05342 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 70  DFVVGPAGTQGVTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGT 249
           D VV P G+   TH TI  A+ +  +  +  R  I +  G Y   + +P     + L G 
Sbjct: 213 DAVVAPDGSG--THKTIGEALLSTSLASSGGRTKIYLKAGTYHENINIPTKQKNVMLVGD 270

Query: 250 GENR 261
           G+ +
Sbjct: 271 GKGK 274


>At3g29090.1 68416.m03642 pectinesterase family protein similar to
           pectinesterase precursor GB:Q43043 [Petunia
           integrifolia]; contains Pfam profile: PF01095
           pectinesterase
          Length = 317

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 109 HTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYG 246
           + ++Q A+D+  +  T  R  I + PG Y+  VYVP     IT  G
Sbjct: 17  YCSVQDAIDSVPLGNTC-RTVIRLSPGIYRQPVYVPKRKNFITFAG 61


>At1g53840.1 68414.m06128 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 586

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 52  TLPAQPDFVVGPAGTQGVTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGG 231
           T   +PD  V   GT  V   T+  AV A + K++ K   I V  G Y   V +  +   
Sbjct: 274 TAGLKPDVTVAGDGTGDVL--TVNEAV-AKVPKKSLKMFVIYVKSGTYVENVVMDKSKWN 330

Query: 232 ITLYGTGENR 261
           + +YG G+ +
Sbjct: 331 VMIYGDGKGK 340


>At4g11980.1 68417.m01907 MutT/nudix family protein low similarity
           to SP|P54570 ADP-ribose pyrophosphatase (EC 3.6.1.13)
           {Bacillus subtilis}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 309

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 49  ITLPAQPDFVVGPAGTQGVTHTTIQXAVDAAIIK 150
           ITLP+QP+  V  + T G++ +  + A+D+++ +
Sbjct: 47  ITLPSQPNEPVLVSATAGISSSDFRDAIDSSLFR 80


>At3g46340.1 68416.m05018 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 889

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
 Frame = -2

Query: 291 HQGKAQSSHQSVFTCTVQSNSTRSGRDIYRS--LILTRHHGNILALVGTLDN----CRIY 130
           + G    S Q V    +  +ST+  ++      L+L  HH N+++LVG  D       IY
Sbjct: 600 YHGDINGSSQQVAVKLLSQSSTQGYKEFKAEVELLLRVHHINLVSLVGYCDERDHLALIY 659

Query: 129 RXL-NRGMRYTLSARRADNKVR 67
             + N+ +++ LS +   + ++
Sbjct: 660 EYMSNKDLKHHLSGKHGGSVLK 681


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,042,702
Number of Sequences: 28952
Number of extensions: 280034
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)