Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0130.Seq
         (962 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45207.2 68414.m05186 remorin family protein Since this genom...    30   2.6  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    30   2.6  
At4g27820.1 68417.m03996 glycosyl hydrolase family 1 protein con...    29   4.6  
At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.0  

>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/76 (31%), Positives = 37/76 (48%)
 Frame = -1

Query: 398 QNINAYNLPFAIXXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFPSHDVVKRRPV 219
           QN+++    F++  R C E RS R+ +L ++L      +  LS VT   P    VKR  V
Sbjct: 118 QNLDSARSSFSVALRECQERRS-RSEALAKKLDYQRTVSLDLSNVTSTSPRVVNVKRASV 176

Query: 218 NCNTTHYRANXVPGPP 171
           + N +    +  PG P
Sbjct: 177 STNKSSVFPS--PGTP 190


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 492 EIGLSVFQFGTRVHY*RTWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 647
           E   S F + +      T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 760 EFSRSDFSWNSCTSSYTTATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At4g27820.1 68417.m03996 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 506

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 450 AEIGKIPYKSKE*TEIGLSVFQFG 521
           +++ K+ YKSK+   IGLS+F FG
Sbjct: 236 SKLYKLKYKSKQKGSIGLSIFAFG 259


>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 497 RVECVPVWNKSPLLKNVDSNVKGRKT 574
           R+  VPVW   P+LK+ D  V  R T
Sbjct: 244 RITGVPVWPVGPVLKSPDKKVGSRST 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,298
Number of Sequences: 28952
Number of extensions: 380494
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)