Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0104.Seq
         (961 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36700.1 68415.m04503 pectinesterase family protein contains ...    31   0.86 
At4g17210.1 68417.m02588 myosin heavy chain-related contains wea...    29   4.6  
At2g40935.2 68415.m05054 expressed protein low similarity to PGP...    29   6.1  
At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containi...    29   6.1  

>At2g36700.1 68415.m04503 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 333

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 481 LSKESGQV*INCQTKQVSRA-IGRAWCEYARLSLT*ILQNYVCF**GTN-LSSNKERISI 308
           L   +G V +NC+    +R  +GRAW  YAR+  +    + V    G N +   K + ++
Sbjct: 230 LKDRTGFVFVNCKITGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTV 289

Query: 307 YYEESDSFNENSN 269
           YY E   +   +N
Sbjct: 290 YYGEHRCYGPGAN 302


>At4g17210.1 68417.m02588 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P14105 myosin heavy chain,
           nonmuscle (Cellular myosin heavy chain) (NMMHC) [Gallus
           gallus]
          Length = 527

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 325 KERISIY-YEESDSFNENSNRLVQFCWETIAIYESEVPRPQGKIGGSNKL 179
           K RIS+  YEE    +E S R+VQF  +T+A    E+   + +I G  KL
Sbjct: 437 KIRISLKEYEELRGKHEESERMVQFKAKTVAAQLEEI--NESRIEGERKL 484


>At2g40935.2 68415.m05054 expressed protein low similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 166

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 139 MVIYFLQLIRQFAPIY*SPLSFLEVLELPTRI 234
           MVI++++L+R++A +Y + L    +L   TRI
Sbjct: 1   MVIWYMRLLRRYAELYATTLCHPNLLHFTTRI 32


>At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 866

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -2

Query: 495 LL*CHYQKSLGKFR*IAKRNKFLGLLEEPGVNTH-GCPSREYYKIMYAFSKGQIYHQTRK 319
           +L C+     GK+R +AK  +   +++E G+    GC   E    ++AF     YH   K
Sbjct: 703 ILLCNLYADCGKWREVAKVRR---MMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTK 759

Query: 318 ELAYIMRNLIVSMRTV 271
           E+  ++      M  V
Sbjct: 760 EINTVLEGFYEKMSEV 775


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,757
Number of Sequences: 28952
Number of extensions: 359855
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)