Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16060.1 68417.m02436 expressed protein                             29   4.6  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    29   4.6  
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi...    29   6.1  
At3g27025.1 68416.m03381 expressed protein                             28   8.0  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   8.0  

>At4g16060.1 68417.m02436 expressed protein
          Length = 237

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -1

Query: 777 KQGCDSPYSADAAGSLSISRSEGLSMVLSIASVTSTSFPSDCSRELTVPF 628
           ++G  +P + + + SLS+   EG S+V+++  + S+  P+   REL   F
Sbjct: 68  ERGIANPETKEIS-SLSVEPCEGESLVVTVFEIKSSEIPAFIGRELEFRF 116


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 37   DKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEY---CGDYDQFDLANEVDTLEQF 198
            D ++  +  K  G  +S+ +  S     + ++ +Y   C D D  DL NE+D  E +
Sbjct: 1090 DDNYNHHKIKGCGIRLSEDDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSEDY 1146


>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
           finger family protein contains Pfam profiles: PF01448
           ELM2 domain, PF00628 PHD-finger
          Length = 631

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 623 NENGTVSSREQSEGKDV-EVTEAIDKTIDNPSDLLIESEPAASAEYGLSHPCFSA 784
           ++  TVSSRE  +   V EVT + D T D+ S L   SE  +++       C+S+
Sbjct: 339 DQRSTVSSRELLDDTQVTEVTCSSDGTNDSCSSLKSSSEVNSTSSKSREDDCYSS 393


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 13  SARAGRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCG 147
           S RA   SD   ++ N+ S  G   D NP        F+++E+CG
Sbjct: 37  SLRAQVFSDVQDIRTNSFSFYGHTHDPNPSKVEQDLRFDEDEFCG 81


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 4   VPNSARAG---RES-DKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCGD-YDQFDL 168
           VP  +  G   R+S   D+ + +  S  GTV   +PRS     MF D+      Y  FD 
Sbjct: 713 VPEISEGGFNKRDSYQNDYQEEDDSSGSGTVVIRSPRSSQSSSMFRDQSSGSTRYTSFDD 772

Query: 169 ANEVDTL 189
           A+   T+
Sbjct: 773 ASTSGTV 779


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,173
Number of Sequences: 28952
Number of extensions: 208751
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)