Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0093.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote...    30   1.2  
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c...    29   3.5  
At5g01750.2 68418.m00094 expressed protein contains Pfam profile...    28   4.7  
At5g01750.1 68418.m00093 expressed protein contains Pfam profile...    28   4.7  
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    28   6.1  
At1g69670.1 68414.m08018 cullin, putative contains similarity to...    28   6.1  

>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 716

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 31  IQTNNITITDLPPGRRSEHRHTSLQSVDIRRTIHAAVKNRSEPDETLNL 177
           IQ+N I  TD  P  R +H H S+ S     T H++  +  +  ETL +
Sbjct: 567 IQSNRIIQTDQQPQERQQHHHKSVSS---EFTAHSSSGSYYQAPETLKM 612


>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to DEAD box
           protein DDX1 [Gallus gallus] GI:16323037,  ryanodine
           receptor [Caenorhabditis elegans] GI:1871447; contains
           Pfam profile PF00622: SPRY domain
          Length = 509

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 13  KRDPVKIQTNNITITDLPPGRRSEHRHTSLQSVDIRRTIHAAVKNRSEPDETLNLTAMLL 192
           K D V  Q  +    D     + +  H  L+ +D   ++  AVK   EP++ L   AM++
Sbjct: 146 KLDSVANQNGSAMEEDEGDEEQDDPPHKKLKQLDCLTSV--AVKEEEEPEQVLPSEAMVV 203

Query: 193 KEKRTSV 213
           +E  T V
Sbjct: 204 EEAATLV 210


>At5g01750.2 68418.m00094 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 217

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 190 LKEKRTSVHLAWDPPKGAAIQNXELLYEVHYSNVI 294
           L+EK  S+H  W   +G +    +LLY V  S+++
Sbjct: 91  LREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSML 125


>At5g01750.1 68418.m00093 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 174

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 190 LKEKRTSVHLAWDPPKGAAIQNXELLYEVHYSNVI 294
           L+EK  S+H  W   +G +    +LLY V  S+++
Sbjct: 91  LREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSML 125


>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 13  KRDPVKIQTNNITITDLPPGRRSEHRHTSLQSVDIRRTIHAAVKNRSEPDETLNLTAMLL 192
           + D  +++  + T T+L   RR+ +  T + SVD     H  +K + EP + + L  MLL
Sbjct: 631 EEDEEQMRIRDETETNLVNLRRTIYL-TIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLL 689

Query: 193 K 195
           +
Sbjct: 690 E 690


>At1g69670.1 68414.m08018 cullin, putative contains similarity to
           Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
           [Homo sapiens]; contains Pfam profile PF00888: Cullin
           family
          Length = 732

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 226 PRPDVRRCVFPLAALRSGSASRLVRFG-F*RQREWFAVYRRFVSLYVDVQ 80
           P PD++RC+  +A ++  +  R         + +WF V  RF S +  V+
Sbjct: 589 PTPDLKRCLQSMACVKGKNVLRKEPMSKEIAEEDWFVVNDRFASKFYKVK 638


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,709
Number of Sequences: 28952
Number of extensions: 210116
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)