Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0092.Seq
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32400.2 68414.m03998 senescence-associated family protein co...    31   0.97 
At1g32400.1 68414.m03997 senescence-associated family protein co...    31   0.97 
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa...    30   2.2  
At2g29600.1 68415.m03594 kelch repeat-containing F-box family pr...    29   3.0  

>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 510
           ++FI +G  +FVI+  GC G    S C +  Y+
Sbjct: 83  YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 510
           ++FI +G  +FVI+  GC G    S C +  Y+
Sbjct: 83  YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115


>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 237

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 530 SDSRVSLHSIPRTRSRTLQPRRL 598
           S S V + S+PRTRS  + PRRL
Sbjct: 78  SSSTVDISSMPRTRSSRMSPRRL 100


>At2g29600.1 68415.m03594 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 415

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 457 EEEDANHHLHNDDHQQEVAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPT 618
           EEE+ N     DDHQ+E      ++ + +I PQ P   I + T  T  + H PT
Sbjct: 33  EEENQNEKPKEDDHQEE-----EVENVPQIPPQMPLELIVS-TIATLRRCHYPT 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,088
Number of Sequences: 28952
Number of extensions: 318570
Number of successful extensions: 973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)