Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0091.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25450.1 68418.m03023 ubiquinol-cytochrome C reductase comple...    45   6e-05
At4g32470.1 68417.m04622 ubiquinol-cytochrome C reductase comple...    45   7e-05
At4g32470.2 68417.m04623 ubiquinol-cytochrome C reductase comple...    38   0.011
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami...    29   3.9  
At2g22720.3 68415.m02692 expressed protein                             28   6.8  
At2g22720.2 68415.m02691 expressed protein                             28   6.8  
At2g22720.1 68415.m02693 expressed protein                             28   6.8  
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    28   9.0  
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc...    28   9.0  
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    28   9.0  

>At5g25450.1 68418.m03023 ubiquinol-cytochrome C reductase complex
           14 kDa protein, putative similar to SP|P48502
           Ubiquinol-cytochrome C reductase complex 14 kDa protein
           (EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
           profile PF02271: Ubiquinol-cytochrome C reductase
           complex 14kD subunit
          Length = 122

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 24/60 (40%), Positives = 34/60 (56%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 78
           +L RLP  +VD RN R++RA+ LSM+   LP            YL  ++  V++ER ERE
Sbjct: 50  ALNRLPREIVDARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAERE 109


>At4g32470.1 68417.m04622 ubiquinol-cytochrome C reductase complex
           14 kDa protein, putative similar to SP|P48502
           Ubiquinol-cytochrome C reductase complex 14 kDa protein
           (EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
           profile PF02271: Ubiquinol-cytochrome C reductase
           complex 14kD subunit
          Length = 122

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 25/60 (41%), Positives = 34/60 (56%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 78
           ++ RLP  VVD RN R+ RA+ LSM+   LPK+          YL  ++  VE+E  ERE
Sbjct: 50  AMNRLPREVVDARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKERE 109


>At4g32470.2 68417.m04623 ubiquinol-cytochrome C reductase complex
           14 kDa protein, putative similar to SP|P48502
           Ubiquinol-cytochrome C reductase complex 14 kDa protein
           (EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
           profile PF02271: Ubiquinol-cytochrome C reductase
           complex 14kD subunit
          Length = 101

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 159
           ++ RLP  VVD RN R+ RA+ LSM+   LPK+
Sbjct: 50  AMNRLPREVVDARNQRLKRAMDLSMKHEYLPKD 82


>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
           {Escherichia coli O157:H7}; contains Pfam profiles
           PF01743: polyA polymerase family protein, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 881

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 212 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 66
           RI   ++ + QK  +PK++  +  ED L   PI+++  KE  E E  E+
Sbjct: 466 RIFECVKENGQKGFVPKQDSKREPEDDLETKPILKK-HKENSEEENKEQ 513


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = -1

Query: 185 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 63
           M + +LP + +++Y++D + +    E ++KE     R+ RE+ E+E
Sbjct: 503 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 548


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = -1

Query: 185 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 63
           M + +LP + +++Y++D + +    E ++KE     R+ RE+ E+E
Sbjct: 606 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 651


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = -1

Query: 185 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 63
           M + +LP + +++Y++D + +    E ++KE     R+ RE+ E+E
Sbjct: 274 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 319


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 224 ERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKEY 60
           ER  RI   + L  +K     E+W         L  I E++++  LE +Q E+EY
Sbjct: 515 ERLNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEIDRVNLEIQQAEREY 569


>At2g26470.1 68415.m03176 expressed protein contains PF02586:
           Uncharacterized ACR, COG2135; weak similarity to NF-M
           protein (GI:205688) [Rattus norvegicus]
          Length = 487

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 586 DDP---RISPLTSQYECPQLSLLIITSEF*KPTK*NRDHILLFHARNIQGSIFSPLLST 753
           DDP   ++ PL S YE   L    +TS   KPT    + I     +  Q S+ S   ST
Sbjct: 191 DDPSTTKLQPLLSPYEKSDLVWYPVTSAIGKPTFDGPECIQQIPLKTSQNSLISKFFST 249


>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 337 WAYNLSGFNKYGLLRD 290
           WA  +SGFN+YG LR+
Sbjct: 519 WASMISGFNEYGYLRE 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,775
Number of Sequences: 28952
Number of extensions: 341977
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)