Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0090.Seq
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    34   0.11 
At2g12505.1 68415.m01352 hypothetical protein                          32   0.56 
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    29   3.0  
At3g47230.1 68416.m05128 expressed protein                             29   4.0  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   7.0  
At3g13360.1 68416.m01681 expressed protein                             28   7.0  
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    28   7.0  

>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = -2

Query: 647 ADFGPNWLKNELI*QKFNANFNKILTLTICHSPFSCATVGKGDRCGLFAITPAGERGMCC 468
           A +GP W++   I  +FN  +N+  T  + + P +  T+G  D  G +    +G++G   
Sbjct: 635 AKYGPKWIRTRTILDRFNPRWNEQYTWDV-YDPCTVLTIGVFDN-GRYKRDESGKQG--- 689

Query: 467 KAIKLGNARV 438
           + +++G  RV
Sbjct: 690 RDVRVGKIRV 699


>At2g12505.1 68415.m01352 hypothetical protein
          Length = 344

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +1

Query: 370 PIRPIVSRITIHWPSFYNV-VTGKTLALPNLIALQHIPLSPAG------VIAKSPHRSPF 528
           PIRP + +      S Y +    KT  LP+  +  H  + P G      V   SP R+PF
Sbjct: 183 PIRPTIGQADPIRRSVYQIRFVPKTNGLPSPFSTLHRTVGPGGSMRISSVELYSPSRTPF 242

Query: 529 PT-VAQLNGEWQI 564
           PT   ++ GEW +
Sbjct: 243 PTNNFRMWGEWML 255


>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 49  TTRLGLSLSSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISR 228
           TTR+ L   S+P+ R     +T+R     T+   + P KT   + +       P+  +SR
Sbjct: 98  TTRVPLRSESDPSSRPTRSGSTIRPSNIPTIRSSSVPKKTTTTQIQASASVSSPKRTVSR 157


>At3g47230.1 68416.m05128 expressed protein
          Length = 277

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
 Frame = +1

Query: 349 PPGGARYPIRPIVSRITIHWPSFYNV-VTGKTLALPNLIALQHIPLSPAG------VIAK 507
           P  G   PIRP +        S Y +    KT  LP+  +  H  + P G      V   
Sbjct: 29  PTIGLADPIRPTIGLADPIRRSVYQIRFVSKTNGLPSPSSTLHRTVGPGGSMRISSVELY 88

Query: 508 SPHRSPFPT 534
           SP R+PFPT
Sbjct: 89  SPSRTPFPT 97


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 104 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 235
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At3g13360.1 68416.m01681 expressed protein
          Length = 459

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 42  GVYHPLRAVTLKQPDSKERPSRRDPPSLRAWHPLRENGPVQDE 170
           GV  P R+ +++ P      +R+    L+ W  ++ +GPV+DE
Sbjct: 33  GVGSPQRSNSVESPGGSVHSTRKGF-GLKKWRRIKRDGPVRDE 74


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
            protein ESTs gb|F20110 and gb|F20109 come from this gene;
            contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = +1

Query: 211  EHHISRYRLKQRDSVWAIFLFARRY*GNPG*FLFLRLLICLNSAGDPPGGARYPIRPIVS 390
            E  +  YR K+   +    L A     NPG FL + L     + G  P     PI   V 
Sbjct: 1337 EGDLGSYRGKKTSDISRTKLSASAEPYNPGGFLVIDLQSSAATIGSYPIMVADPISWAVV 1396

Query: 391  RITIHWPSFYNVVTGKTLALP 453
               IH P +Y+ +    +  P
Sbjct: 1397 SCGIHSPPYYSAIHSNGVGTP 1417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,300
Number of Sequences: 28952
Number of extensions: 378694
Number of successful extensions: 917
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)