Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            85   2e-17
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...    85   2e-17
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    84   6e-17
At3g55690.1 68416.m06187 expressed protein predicted proteins, A...    27   6.9  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 39/45 (86%), Positives = 42/45 (93%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKS R
Sbjct: 102 EQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 39/45 (86%), Positives = 42/45 (93%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKS R
Sbjct: 102 EQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 38/45 (84%), Positives = 42/45 (93%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKS R
Sbjct: 102 EQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146


>At3g55690.1 68416.m06187 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 293

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 539 YCTPPNDIAMKHDAATXPPDXFLEGLTXRFLVS 441
           + T P D     D  T   D FL GLT R  +S
Sbjct: 43  FSTSPEDSTETEDETTDDEDDFLAGLTRRLALS 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,478,702
Number of Sequences: 28952
Number of extensions: 222865
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)