Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0133
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ...    28   6.8  
At2g25660.1 68415.m03075 expressed protein                             28   6.8  
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    27   8.9  

>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 861

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 543 MKFIVYGSFFQWVLVVFESHESYSQETKGQYDSTN 439
           +KFI+  + + ++ +V E+HE + +E      S N
Sbjct: 498 IKFIIQTNLYTYLAMVLEAHERFEKEMSNDQSSGN 532


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 349 WSHPLFWLQLKSLFHFFSSFCLVFWY 272
           W   LF+L+    F   S  CL+ WY
Sbjct: 98  WEEGLFFLRCSVFFAVISGVCLLVWY 123


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 181 ACSSGFTEAGTDDADTGVASVTFSASGFTF 92
           A SS    + + +A TG+AS  FSAS F+F
Sbjct: 237 ALSSFHQHSSSKNAFTGLASTGFSASSFSF 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,291
Number of Sequences: 28952
Number of extensions: 212559
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)