Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28070.1 68418.m03387 hypothetical protein                          29   3.7  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    29   3.7  
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil...    27   8.6  

>At5g28070.1 68418.m03387 hypothetical protein 
          Length = 88

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 140 YLIIQISPCA*IVQPMNLRLPHSMPRTGATNATEGTKRSLRS 265
           +L+++ S  A  V+   L +P+  P  G+T  T+GT  S+ S
Sbjct: 4   FLVLEDSIHASEVKAQQLYMPNGAPNFGSTQRTQGTDASVTS 45


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 47  PSSSSYLARDRRKQFSFIGSLKGTGGMEWSHY 142
           P  S Y       QF+F G+L+G  GM+W  +
Sbjct: 491 PGFSLYRGLYELAQFAFRGNLRGEDGMKWKDF 522


>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
           to malonyl CoA synthetase GB:AAF28840 from
           [Bradyrhizobium japonicum]; contains Pfam AMP-binding
           enzyme domain PF00501; identical to cDNA acyl-activating
           enzyme 13 (At3g16170) GI:29893232, acyl-activating
           enzyme 13 [Arabidopsis thaliana] GI:29893233
          Length = 544

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 236 WRSWRPSVASNEEDVGSSVAQFT 168
           WR WR S   N+E    S+  FT
Sbjct: 252 WRRWRESYPVNDEKTNDSITVFT 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,113
Number of Sequences: 28952
Number of extensions: 325050
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)