Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0107
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50890.1 68418.m06308 hypothetical protein                          31   0.85 
At1g31850.3 68414.m03915 dehydration-responsive protein, putativ...    29   3.4  
At1g31850.2 68414.m03914 dehydration-responsive protein, putativ...    29   3.4  
At1g31850.1 68414.m03913 dehydration-responsive protein, putativ...    29   3.4  
At3g12420.1 68416.m01547 hypothetical protein                          28   4.5  
At1g58300.1 68414.m06632 heme oxygenase, putative similar to hem...    28   6.0  

>At5g50890.1 68418.m06308 hypothetical protein
          Length = 408

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 374 QTNKQNVTSHFRHVLPTLYSEEKKNTVDL 288
           Q +  NV+S FR+ +P+ Y   +K TVDL
Sbjct: 282 QVSPSNVSSGFRNWVPSFYGSNQKPTVDL 310


>At1g31850.3 68414.m03915 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 362 QNVTSHFRHVLPTLYSEEKKNTVDLNT 282
           +N   H++ VLP L +++ +N +D+NT
Sbjct: 436 KNRVKHYKKVLPALGTDKIRNVMDMNT 462


>At1g31850.2 68414.m03914 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 362 QNVTSHFRHVLPTLYSEEKKNTVDLNT 282
           +N   H++ VLP L +++ +N +D+NT
Sbjct: 436 KNRVKHYKKVLPALGTDKIRNVMDMNT 462


>At1g31850.1 68414.m03913 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 362 QNVTSHFRHVLPTLYSEEKKNTVDLNT 282
           +N   H++ VLP L +++ +N +D+NT
Sbjct: 436 KNRVKHYKKVLPALGTDKIRNVMDMNT 462


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 62  EXXHQRSAPQDHRGRVRHAAPAGDRPRASYPRDP 163
           E  ++ SAP+DH         +   PRASY  DP
Sbjct: 134 EGYYEHSAPRDHNADPLEDNESAHPPRASYCADP 167


>At1g58300.1 68414.m06632 heme oxygenase, putative similar to heme
           oxygenase 4 GI:14485565 from [Arabidopsis thaliana]
          Length = 283

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 38  RHASTLHREXXHQ-RSAPQDHRGRVRHAAPAGDRPRASYPRDP 163
           R+  T+     H  R A +D    V   A AG++P   YPR+P
Sbjct: 34  RYVRTIAAPRRHLVRRANEDQTLVVNVVAAAGEKPERRYPREP 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,803
Number of Sequences: 28952
Number of extensions: 188552
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)