Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0098
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ...    34   0.075
At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At3g48770.1 68416.m05326 hypothetical protein                          28   6.5  
At1g03540.1 68414.m00335 pentatricopeptide (PPR) repeat-containi...    27   8.6  

>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similiar to rab11 binding
           protein (GI:4512103) [Bos taurus]
          Length = 903

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 300 PPIPKSERGKARTQPEPELDPQVIGRYEGFKSCHG*PVQH---FHEPDSVGT 446
           PP+PK    K++ QPE E  P+ +G  E F+S      QH   F E  S+ T
Sbjct: 796 PPMPKKAATKSQIQPEEEAGPE-LGSSESFRSSMNSSEQHSSRFGESPSINT 846


>At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 471

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 142 GLMGQIDLLRLMLPALCHLAVEDKARDIMFNLKQED 249
           G+ G  D+  +M+P +C   V   + D++ N  +ED
Sbjct: 427 GIAGDADVWSVMIPTMCKEPVISDSIDLLLNTVKED 462


>At3g48770.1 68416.m05326 hypothetical protein
          Length = 1899

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
 Frame = +1

Query: 289  IIRNLLFLSQKEAK--LGLNQSQNWIPKLLEDMKDSRAAMVSLCNIFMNLTVLAPK--IV 456
            I R   FLS+ E K   G +  + WIP       D + A +S C +F    +   K  ++
Sbjct: 1514 ISRVYRFLSEAEWKPEKGASSGRIWIPS------DEKWADISSCVLFDKDKLFGSKFNVL 1567

Query: 457  DN---SMLFNTLLKFIFNNLQN*RTSLKILSYMDTWQYWD 567
            +N   S   + LL F F++    R +  I  Y + W+YW+
Sbjct: 1568 ENHYCSGKDHNLLGF-FSSAFGVRINPSIEDYCELWKYWE 1606


>At1g03540.1 68414.m00335 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 609

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 188 SAGNIRRSKSIWPMSPELSSNGSPSDLFFSASFLDLY 78
           + GN+RR K    +  +L +NG  S++   +S LD+Y
Sbjct: 274 ACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMY 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,932
Number of Sequences: 28952
Number of extensions: 292839
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)