Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0052
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 135 2e-32
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 134 4e-32
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 134 4e-32
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 134 4e-32
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 134 4e-32
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.012
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 36 0.016
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 2.4
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 29 2.4
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 2.4
At4g14280.1 68417.m02201 hypothetical protein 28 5.5
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 5.5
At5g48500.1 68418.m05997 expressed protein similar to unknown pr... 27 9.6
At5g48180.1 68418.m05952 kelch repeat-containing protein contain... 27 9.6
At3g55000.1 68416.m06104 tonneau family protein similar to tonne... 27 9.6
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 135 bits (326), Expect = 2e-32
Identities = 64/93 (68%), Positives = 72/93 (77%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTK 509
G+DFYVVL RPG+ VA RRR +VG HR+TK
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVGIQHRVTK 148
Score = 104 bits (250), Expect = 4e-23
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +1
Query: 67 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 247 CTVEELKQKKSL 282
TV K + L
Sbjct: 61 VTVRGEKAMQLL 72
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI K+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 134 bits (324), Expect = 4e-32
Identities = 64/93 (68%), Positives = 72/93 (77%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTK 509
G+DFYVVL RPG+ VA RRR +VG HR+TK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158
Score = 108 bits (260), Expect = 2e-24
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI K+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 134 bits (324), Expect = 4e-32
Identities = 64/93 (68%), Positives = 72/93 (77%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTK 509
G+DFYVVL RPG+ VA RRR +VG HR+TK
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 148
Score = 104 bits (250), Expect = 4e-23
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +1
Query: 67 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 247 CTVEELKQKKSL 282
TV K + L
Sbjct: 61 VTVRGEKAMQLL 72
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI K+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 134 bits (324), Expect = 4e-32
Identities = 64/93 (68%), Positives = 72/93 (77%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTK 509
G+DFYVVL RPG+ VA RRR +VG HR+TK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158
Score = 108 bits (260), Expect = 2e-24
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI K+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 134 bits (324), Expect = 4e-32
Identities = 64/93 (68%), Positives = 72/93 (77%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTK 509
G+DFYVVL RPG+ VA RRR +VG HR+TK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158
Score = 108 bits (260), Expect = 2e-24
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI K+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 273 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 437
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 36.3 bits (80), Expect = 0.016
Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 231
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 232 KIAVHCTV 255
+ + T+
Sbjct: 139 PLGIAVTL 146
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 249 YSRGAKAEEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFY 425
Y++ E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL
Sbjct: 123 YTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQ 182
Query: 426 VVL 434
V L
Sbjct: 183 VFL 185
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 187 KARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 360
+A +TV GI + ++ ++ L+ K + ++ G+ + R+ +F
Sbjct: 140 QATWTVSGVGIS-SFRVLQSSSISLLRNLKRISDGIFKPILDNGLREATTRIGRQEIFDR 198
Query: 361 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 447
+ TLTW +S +P L + W + S ++
Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 263 SSSTVQWTAI-FSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 102
S+ST Q + FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 232 STSTPQPSVSNFSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 367 TLTWVSSTIPQLEFMDWTFTS 429
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 37 EGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR 195
EG +++++ ++R L LN C+ E+ D A ++ L PV+ + R
Sbjct: 650 EGLGSGIESLVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPR 702
>At5g48500.1 68418.m05997 expressed protein similar to unknown
protein (gb|AAD28645.1)
Length = 167
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 269 CFSSSTVQWTAIFSLRRIPKDRTVYLA 189
CF ++T Q A P+DR +YLA
Sbjct: 33 CFETATTQQPAFLHYASYPQDRDLYLA 59
>At5g48180.1 68418.m05952 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip
elongation aberrant protein 1 (Cell polarity protein
tea1) (SP:P87061) [Schizosaccharomyces pombe]
Length = 326
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 284 LKDFFCFSSSTVQWTAIFSLRRIPKDRTVYLAL 186
L D CF ++ QW A+ + +P R+V+ A+
Sbjct: 196 LGDIHCFDLASEQWKAVETTGDVPAARSVFPAV 228
>At3g55000.1 68416.m06104 tonneau family protein similar to tonneau
1b (GI:11494367) [Arabidopsis thaliana]
Length = 260
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 437 PARFQRSTQKA*DRKSGISPPPHKEDAMKWFQQKYD 544
P R S +A DR++G+S +++D W Q D
Sbjct: 183 PQRRPVSASQASDRRAGLSTSGYRKDEFNWRQGNQD 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,285
Number of Sequences: 28952
Number of extensions: 281278
Number of successful extensions: 780
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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