Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY) domain-c...    28   6.1  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   6.1  

>At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 447

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 527 KYHYQKKPHLFEERERESEN 468
           K+H+  KPH  E+ E E E+
Sbjct: 9   KFHHSAKPHTMEDNEEEEES 28


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 434 KKKIACVQFTRVRSETFKKLKYNYPKCLSILLV 336
           KK++AC     + +E FK + ++Y K + I  V
Sbjct: 37  KKRVACEDTDAIMNEEFKHISFSYNKLVLICCV 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,222
Number of Sequences: 28952
Number of extensions: 213212
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)