Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0046
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28420.1 68414.m03494 homeobox transcription factor, putative...    28   6.8  
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ...    27   8.9  
At1g50280.1 68414.m05637 phototropic-responsive NPH3 family prot...    27   8.9  
At1g79150.1 68414.m09229 expressed protein ; expression supporte...    25   9.8  

>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 57  GNKKKKRSISSSAQLNNKKKRLQTTEVS 140
           G  +K RS+   A LNNKKK++     S
Sbjct: 5   GEDQKIRSVVGDANLNNKKKKIDNNSSS 32


>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
           MLO-like protein 5 (MLO5) identical to MLO-like protein
           5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 501

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 484 NLLGQLVIKILFIAFFSLSYQSVLCQSGRCFHVASLLWADVIPTSHE 344
           N L Q+ I I F+A F + Y ++    GR       +W + +   HE
Sbjct: 145 NALHQVHIFIFFLAVFHVIYSAITMMLGRAKIRGWKVWEEEVINDHE 191


>At1g50280.1 68414.m05637 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 525

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 45  SVYKGNKKKKRSISSSAQLNNKKKRLQTTEVSNF 146
           S Y G+ +K   I  S +  NKKKR+ T E+++F
Sbjct: 25  SKYSGSLRKM--IKQSKKKRNKKKRIITIEINDF 56


>At1g79150.1 68414.m09229 expressed protein ; expression supported
           by MPSS
          Length = 495

 Score = 25.0 bits (52), Expect(2) = 9.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 108 KKKRLQTTEVSNFIMLT*FKITLTHMYTVTQS*L-THYC 221
           K++R   TE  + +  T F+I    MYT+ +  L  H+C
Sbjct: 452 KERRKMQTETLSAVFETYFRILRNTMYTIGERYLYIHFC 490



 Score = 20.6 bits (41), Expect(2) = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 54  KGNKKKKRSISSSAQLNNKKK 116
           K NK+K +   +  Q N +KK
Sbjct: 405 KNNKRKTQEEQNQVQENERKK 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,914
Number of Sequences: 28952
Number of extensions: 255785
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)