Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0147.Seq
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19900.1 68415.m02326 malate oxidoreductase, putative similar...    29   2.3  
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    29   3.0  
At1g49470.1 68414.m05544 expressed protein contains Pfam profile...    29   3.9  
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom...    29   3.9  
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom...    29   3.9  
At5g25880.1 68418.m03071 malate oxidoreductase, putative similar...    28   5.2  
At5g11670.1 68418.m01364 malate oxidoreductase, putative similar...    28   5.2  
At1g79750.1 68414.m09304 malate oxidoreductase, putative similar...    28   5.2  
At3g61300.1 68416.m06860 C2 domain-containing protein anthranila...    28   6.9  
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    28   6.9  
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD...    27   9.1  
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD...    27   9.1  
At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI...    27   9.1  

>At2g19900.1 68415.m02326 malate oxidoreductase, putative similar to
           NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
           (SP:P51615) {Vitis vinifera}
          Length = 581

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
           L+SA+  VRPSA LP+  D+   N   L  + ++ ++
Sbjct: 203 LYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLR 239


>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
           (UBP16) similar to ubiquitin-specific protease 16
           GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = -1

Query: 601 KEVVQNYDIAGRSWSGYAASMAR*PGDEFF*CDNCQALHLPHMQNFDGVFDAKIDLIDNT 422
           +E V   + +G S+SG+++S     GDE      C++      +  + + DA + +    
Sbjct: 184 EEAVSVAETSGSSFSGFSSSPRNDSGDEI---SRCESFSSSESERSESLLDAHVSVEPED 240

Query: 421 ILFSAMAEVRPSAVL 377
             FS + E  PS +L
Sbjct: 241 TCFSTI-EDAPSKLL 254


>At1g49470.1 68414.m05544 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 302

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 232 GSCVRAKS----RFRWSFLKLMPINCCYRLMMKGKTTLPKTISSTD 107
           G+ +RAK+    +F W    ++ I C   L   GK  LPK  SS +
Sbjct: 231 GAEIRAKALANLQFSWMLSAILIITCALCLKYSGKVVLPKIRSSLE 276


>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 446 QNRSDR*HDPVFCHGGSPTFSRIAAGGGFICHQCQFADRESI 321
           +NRS +   P+     S   S  A   G ICHQCQ  DRE I
Sbjct: 178 RNRSHQSTSPMEYSAASTDVS--AESLGEICHQCQRKDRERI 217


>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 446 QNRSDR*HDPVFCHGGSPTFSRIAAGGGFICHQCQFADRESI 321
           +NRS +   P+     S   S  A   G ICHQCQ  DRE I
Sbjct: 178 RNRSHQSTSPMEYSAASTDVS--AESLGEICHQCQRKDRERI 217


>At5g25880.1 68418.m03071 malate oxidoreductase, putative similar to
           NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
           (SP:P12628) {Phaseolus vulgaris}
          Length = 588

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
           L++A+  +RPSA LP+  D+   N   L  + ++ ++
Sbjct: 210 LYTALGGIRPSACLPITIDVGTNNEKLLNNEFYIGLK 246


>At5g11670.1 68418.m01364 malate oxidoreductase, putative similar to
           NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
           (SP|P12628) {Phaseolus vulgaris}
          Length = 588

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
           L++A+  +RPSA LP+  D+   N   L  + ++ ++
Sbjct: 210 LYTALGGIRPSACLPITIDVGTNNEKLLNDEFYIGLK 246


>At1g79750.1 68414.m09304 malate oxidoreductase, putative similar to
           malate oxidoreductase (NADP-dependent malic enzyme)
           GB:P34105 (Populus balsamifera subsp. trichocarpa)
          Length = 646

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 418 LFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQ 308
           L++A+  VRPSA LP+  D+   N   L  + ++ ++
Sbjct: 268 LYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLR 304


>At3g61300.1 68416.m06860 C2 domain-containing protein anthranilate
           phosphoribosyltransferase (fragment) - Pisum sativum,
           PIR:T06460
          Length = 972

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +1

Query: 307 PAYQEMLSRSANWH*WQINPPPAAIRLKVGLPPWQKTGSCYRSDRFWHQRHRRNSAYGAD 486
           P  +   S   N   +Q  PPP   + +  LPP     S Y++ RF        +  G +
Sbjct: 162 PTNESNHSPRGNQQSFQPQPPPP--QSQTALPPPMMESSLYQAPRFGTP---IPTTMGFN 216

Query: 487 AEPDSYHIKKTHP 525
             P  Y IK+T P
Sbjct: 217 PNPPDYSIKETKP 229


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 227 VRQSEEQISMVILEANAHQLLLPTDDEGQ 141
           + Q  EQIS ++ +AN +Q+L P D  G+
Sbjct: 626 IEQLAEQISRLVPKANEYQILKPVDVVGK 654


>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 857

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 427 YRSDRFW-HQ-RHRRNSAYGADAEPDSYHIKKTHPQVIEP----LTQRIQTRNDQRCHNF 588
           Y+ +  W H+ RH R   YG      + H+ KT  + +EP      +++ T +++    F
Sbjct: 743 YQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRF 802

Query: 589 VQP 597
           + P
Sbjct: 803 IDP 805


>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 868

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 427 YRSDRFW-HQ-RHRRNSAYGADAEPDSYHIKKTHPQVIEP----LTQRIQTRNDQRCHNF 588
           Y+ +  W H+ RH R   YG      + H+ KT  + +EP      +++ T +++    F
Sbjct: 754 YQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRF 813

Query: 589 VQP 597
           + P
Sbjct: 814 IDP 816


>At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA)
           nearly identical to C-terminal binding protein
           ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535;
           contains Pfam profile PF02826: D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain
          Length = 636

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 318 LICRMIICQSWWFASLYPLCRG 253
           L+ R  +  S W  SL PLCRG
Sbjct: 136 LLSRHALSASGWLGSLQPLCRG 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,933
Number of Sequences: 28952
Number of extensions: 355508
Number of successful extensions: 908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)