Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0143.Seq
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 120 1e-27
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 118 4e-27
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 116 2e-26
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 108 3e-24
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 104 7e-23
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 103 1e-22
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 83 1e-16
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 42 4e-04
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 42 6e-04
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 40 0.001
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate... 33 0.27
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 31 1.1
At2g27280.1 68415.m03278 hypothetical protein 29 2.5
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa... 29 4.4
At3g18810.1 68416.m02389 protein kinase family protein contains ... 28 5.8
At2g22890.1 68415.m02717 expressed protein ; expression support... 28 5.8
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 5.8
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 5.8
At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr... 28 5.8
At5g56110.1 68418.m07000 myb family transcription factor contain... 28 7.7
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 28 7.7
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 7.7
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 120 bits (288), Expect = 1e-27
Identities = 57/81 (70%), Positives = 68/81 (83%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
IR+NTEGEYA LEHE V GVVES+KV+T SER+A++AFE+A N RKKVT VHKANIM
Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIM 205
Query: 691 KLSDGLFLETSRRLAKEYPDI 753
KL+DGLFLE+ R +AK+YP I
Sbjct: 206 KLADGLFLESCREVAKKYPSI 226
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/89 (37%), Positives = 55/89 (61%)
Frame = +2
Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
++ + API FE D+ M + +I++N V LKG ++T V+S NV LR
Sbjct: 60 MEAMHAPIFFEKYDVHGEMSRVPPE--VMESIRKNKVCLKGGLKTPVGGG-VSSLNVQLR 116
Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511
ELD++A ++NC + PG+ TRH+++D+V+
Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVV 145
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 138 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
R +P+ G AVT++PG GIGP V + +
Sbjct: 24 RSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVME 61
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 118 bits (284), Expect = 4e-27
Identities = 56/81 (69%), Positives = 68/81 (83%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
IR+NTEGEYA LEHE V GVVES+KV+T SER+A++AFE+A N RKKVT VHKANIM
Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIM 205
Query: 691 KLSDGLFLETSRRLAKEYPDI 753
KL+DGLFLE+ + +AK+YP I
Sbjct: 206 KLADGLFLESCQEVAKKYPSI 226
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/89 (35%), Positives = 58/89 (65%)
Frame = +2
Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
++ + AP+ FE ++ M + + + +IK+N V LKG ++T V+S NV LR
Sbjct: 60 MEAMHAPVYFEPFEVHGDMKSLPEG--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLR 116
Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511
ELD++A ++NC + PG+A+RH+++D+V+
Sbjct: 117 KELDLFASLVNCFNLPGLASRHENVDIVV 145
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 116 bits (278), Expect = 2e-26
Identities = 56/81 (69%), Positives = 66/81 (81%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
IR+NTEGEY+ LEHE V GVVES+KV+T SER+AR+AFE+A N RKKVT VHKANIM
Sbjct: 147 IRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIM 206
Query: 691 KLSDGLFLETSRRLAKEYPDI 753
KL+DGLFLE+ R +AK Y I
Sbjct: 207 KLADGLFLESCREVAKHYSGI 227
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/97 (35%), Positives = 58/97 (59%)
Frame = +2
Query: 221 VHGIRSRHIQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYV 400
V G + ++ + AP+ FE ++ M + I ++KRN V LKG + T V
Sbjct: 53 VTGAVEQVMEAMHAPVHFERYEVLGNMRKVPEE--VIESVKRNKVCLKGGLATPVGGG-V 109
Query: 401 TSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVL 511
+S N+ LR ELD++A ++NC + PG+ TRH+++D+V+
Sbjct: 110 SSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVV 146
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 126 TPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
T + R +P+ G VT++PG GIGP G V + +
Sbjct: 21 TSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVME 62
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 108 bits (260), Expect = 3e-24
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
IR+NTEGEYA LEHE V GVVES+K SER+A++AFE+A N RKKVT VHKANIM
Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKFC----SERIAKYAFEYAYLNNRKKVTAVHKANIM 201
Query: 691 KLSDGLFLETSRRLAKEYPDI 753
KL+DGLFLE+ + +AK+YP I
Sbjct: 202 KLADGLFLESCQEVAKKYPSI 222
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/89 (35%), Positives = 58/89 (65%)
Frame = +2
Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
++ + AP+ FE ++ M + + + +IK+N V LKG ++T V+S NV LR
Sbjct: 60 MEAMHAPVYFEPFEVHGDMKSLPEG--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLR 116
Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511
ELD++A ++NC + PG+A+RH+++D+V+
Sbjct: 117 KELDLFASLVNCFNLPGLASRHENVDIVV 145
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 104 bits (249), Expect = 7e-23
Identities = 46/81 (56%), Positives = 66/81 (81%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
IR+NTEGEY+ LEH+ V GVVES+K++T S RVA +AF +AK +GR++V+ +HKANIM
Sbjct: 157 IRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHGRERVSAIHKANIM 216
Query: 691 KLSDGLFLETSRRLAKEYPDI 753
+ +DGLFL+ R +A++YP+I
Sbjct: 217 QKTDGLFLKCCREVAEKYPEI 237
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 GAPIDFEV----VDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
G PI++E +IDP + + ++ +++RN VGLKG + T + S N+ LR
Sbjct: 70 GVPIEWEEHYVGTEIDPRTQSFLTWE-SLESVRRNKVGLKGPMATPIGKGH-RSLNLTLR 127
Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVV 508
EL++YA + C S PG TR+ D+D++
Sbjct: 128 KELNLYANVRPCYSLPGYKTRYDDVDLI 155
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 103 bits (248), Expect = 1e-22
Identities = 47/81 (58%), Positives = 64/81 (79%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
IR+NTEGEY+ LEH+ V GVVES+K++T S RVA +AF +AK +GRKKV+ +HKANIM
Sbjct: 157 IRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYAKTHGRKKVSAIHKANIM 216
Query: 691 KLSDGLFLETSRRLAKEYPDI 753
+ +DGLFL+ +A +YP+I
Sbjct: 217 QKTDGLFLQCCDEVAAKYPEI 237
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +2
Query: 329 ITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVV 508
+ ++ +N VGLKG + T + S N+ LR EL++YA + C S PG TR+ D+D++
Sbjct: 97 LQSVLKNKVGLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLI 155
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 83.4 bits (197), Expect = 1e-16
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Frame = +1
Query: 511 IRQNTEGEYAMLEHESVNGVVESMKV-VTADNSERVARFAFEFAKKNGRKKVTTVH-KAN 684
IR+NTEGEYA EHE V GV+ES +V +T S+R+A++AFE+A + RKKVT VH
Sbjct: 100 IRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKKVTAVHNNGK 159
Query: 685 IMKLSDGLFLETSRRLAKEYPDI 753
KL+D FLE+ + +AK YP+I
Sbjct: 160 YEKLADAFFLESCQEVAKMYPNI 182
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = +2
Query: 422 RNELDMYAYILNCKSYPGVATRHKDIDVVL 511
R ELD++A +++C + G +RH+++D+V+
Sbjct: 70 RKELDLFASLVDCFNLNGQPSRHENVDIVV 99
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +1
Query: 550 HESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRR 729
+E+ V S ++ A +R+AR AFE A+K R K+ +V KAN++ S L+ +
Sbjct: 195 NENGEEVGVSTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTA 252
Query: 730 LAKEYPDI 753
LA EYPD+
Sbjct: 253 LASEYPDV 260
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 177 RHAVTMLPGGGIGPECMGYVRDIFK 251
R+ + +LPG GIGPE + +++ +
Sbjct: 46 RYNIALLPGDGIGPEVISVAKNVLQ 70
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +1
Query: 583 KVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRRLAKEYPDI 753
+V A +R+AR AFE A+K R K+ +V KAN+++ S L+ + LA EYPD+
Sbjct: 202 EVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDV 256
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 69 NLSSKAAPATLSDFDVQHKTPV-IRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDI 245
N+ + PAT Q P +R P + R+ +T+LPG GIGPE + +++
Sbjct: 8 NIRTVKVPATFRAVSKQSLAPFRVRCAVASPGKK---RYTITLLPGDGIGPEVVSIAKNV 64
Query: 246 FK 251
+
Sbjct: 65 LQ 66
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = +1
Query: 583 KVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRRLAKEYPDI 753
++ A +R+AR AFE A+K R K+ +V KAN++ S L+ + LA EYPD+
Sbjct: 203 EIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALASEYPDV 257
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 177 RHAVTMLPGGGIGPECMGYVRDIFK 251
R+ +T+LPG GIGPE + +++ +
Sbjct: 43 RYNITLLPGDGIGPEVISVAKNVLQ 67
>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
similar to menaquinone biosynthesis protein menD
[SP|P17109][E. coli] ; Pfam HMM hit:
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
acid synthase / 2-oxoglutarate decarboxylase
Length = 894
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 164 AIRRSSRGDHAPWRRYRS*VHGIRSRHIQIL-GAPIDFEVVDIDPTMDNDDDVQYAITTI 340
+IRRS P S +HGIR R+I++ G D ++D D +D+D VQ +T
Sbjct: 25 SIRRSRERFSFPESLRVSLLHGIR-RNIEVAQGVQFDGPIMDRDVNLDDDLVVQVCVTRT 83
Query: 341 KRNGVGLKGNIETKSEA 391
+ L+ +E+ EA
Sbjct: 84 LPPALTLELGLESLKEA 100
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 111 DVQHKTPVIRKQKLIPKA-QYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
D+ P++R KLI +A GG + V M P GI E G RD+ +
Sbjct: 450 DMISNDPILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVR 497
>At2g27280.1 68415.m03278 hypothetical protein
Length = 427
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 254 VFEYVANVSHALRTDTASREHGHRVTTAVLRLR 156
V +++ S+ LR DTA +E VTTA RLR
Sbjct: 27 VLDFIGKESNFLRKDTAEKEITDAVTTAKERLR 59
>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase II isoform (GI:15418718) [Mus musculus];
contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
repeats and Pfam PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 1101
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 581 IDSTTPFTDSCSNIAYSPSVFCLIKQHQCPYVWS-QRQGKI 462
++ T P+ +S N S +V C+I VWS R G+I
Sbjct: 166 VEDTAPYKESLGNEFGSAAVVCMIGDEGSRVVWSGHRDGRI 206
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Frame = -1
Query: 268 NRSTEYLNMSRTYP--------MHSGPIPPPGSMVTA*RPP 170
N+S +N+S+ YP M+S P PPPGS + PP
Sbjct: 242 NQSDHVMNLSQQYPGSNGNNNWMNSPPPPPPGSWQPSPPPP 282
>At2g22890.1 68415.m02717 expressed protein ; expression supported
by MPSS
Length = 279
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 573 DHTIHGFVFQHSVFTFCVL 517
DH +HGFV S+F FCVL
Sbjct: 176 DHVVHGFV---SMFAFCVL 191
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 366 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPSI 250
PF PTP + +A W SS S+ ++S ++GAPSI
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI 277
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 366 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPSI 250
PF PTP + +A W SS S+ ++S ++GAPSI
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI 277
>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1049
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -1
Query: 163 ALGISFCFLITGVLCW---TSKSDNVAGAAFELRFTDPRTSDKTFNLVNK 23
AL +S FLI G L W S +D +F LR T D FN +NK
Sbjct: 606 ALIVSLSFLILGALYWRICVSNADGEKRGSFSLRQLKVATDD--FNPLNK 653
>At5g56110.1 68418.m07000 myb family transcription factor contains
PFAM profile: Myb DNA binding domain PF00249
Length = 320
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 234 RIPCTQDRYRLQGAWSPRDDRRIA 163
RIPC + +G W+P +D ++A
Sbjct: 3 RIPCCEKENVKRGQWTPEEDNKLA 26
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 214 PIPPPGSMVTA*RPPYCAL-GISFCF 140
P+PPP + PP CAL GI CF
Sbjct: 99 PLPPPPLIFVGAPPPTCALKGIVCCF 124
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 620 LATLSELSAVTTFIDSTTPFTDSCSNIAYSPSVFCLIKQ 504
+ATLS L TTF+ T P + + N +S + ++ +
Sbjct: 1 MATLSTLEIATTFLSFTAPRSSAAFNYRFSSAAVSVLSR 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,414,102
Number of Sequences: 28952
Number of extensions: 383367
Number of successful extensions: 1217
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -