Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0137.Seq
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19070.1 68418.m02267 expressed protein                             29   3.5  
At4g11350.1 68417.m01831 fringe-related protein various hypothet...    28   4.6  
At2g31020.1 68415.m03782 oxysterol-binding family protein simila...    28   4.6  
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ...    28   4.6  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    28   6.1  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    27   8.0  
At3g16510.1 68416.m02107 C2 domain-containing protein contains s...    27   8.0  
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    27   8.0  

>At5g19070.1 68418.m02267 expressed protein
          Length = 280

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 560 ICFIPITIISGWG*FLASGGAGVFFERSAGYVSSHLACTLFSVAFGAGGFTLLAPVAVAE 381
           + +IP+T+++     L  GG G  F    G+V+  +  TL S A    G T+  P  VA+
Sbjct: 55  VAYIPLTVLAVPASVLTLGG-GYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVVAK 113


>At4g11350.1 68417.m01831 fringe-related protein various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 489

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 461 SHLACTLFS--VAFGAGGFTLLAPVAVA 384
           SHL   +FS  +A+G GGF +  P+AVA
Sbjct: 206 SHLQNIIFSYGMAYGGGGFAISYPLAVA 233


>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 760

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 389 QPRVPAK*NHLRQKQQKIEYTPGARKRSPPTAQKKRQHRR 508
           QP  P K N  R      E TPG +++ PPT  + R  +R
Sbjct: 645 QPENPTKYNLTRFGITLNELTPGLKEKLPPTDSRLRPDQR 684


>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
           related to blue copper-binding protein; similar to
           Stellacyanin (SP:P00302) {Rhus vernicifera}
          Length = 301

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 215 GSDMKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQGVG 66
           GS  K L L++    L  +G    S  +WS  + W W    +  S  G G
Sbjct: 5   GSQKKLLILVVAIACLSSSGAEAWSW-SWSYGSGWGWGSDGSSTSSSGTG 53


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 379 RSATATGASKVKPPAPKATENRVHARCEET 468
           + A++ G +KV P  P ATE  +H RC  T
Sbjct: 606 KEASSLGCNKVHP-LPDATELELHRRCNGT 634


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 515 LASGGAGVFFERSAGYVSSHLACTLFSVAFGAGGFTL 405
           L  G  G+ +   AG++ S LA   F++A   GGF +
Sbjct: 272 LGIGSFGLDWSTVAGFLGSPLAVPFFAIANSFGGFII 308


>At3g16510.1 68416.m02107 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 360

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +1

Query: 337 PPLPAPDRYR*RIHRSATATGASKVKPPAPKATENRVHARCEET*PADRSKKTPAPPDAR 516
           PP P P+ Y+   H          V PP P +  N        T P       P P  + 
Sbjct: 220 PPYPYPNPYQYHSHYPEQPVA---VYPPPPPSASNLYPPPYYSTSPPQHQSYPPPPGHSF 276

Query: 517 NQPQP 531
           +Q QP
Sbjct: 277 HQTQP 281


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
 Frame = +1

Query: 256 KSAVILLLHKNKRVNVDWSAARLMPQYPPLPAPD--RYR*RIHRSATATGASKVKPPAPK 429
           K  V L L  N + +       + P  PPLP     RY+ R H+       S   PP P 
Sbjct: 3   KEEVSLPLGYNHQSSRKMDKEEVSPLPPPLPPLGFGRYQTRNHKKMDKEEVSPPPPPLPL 62

Query: 430 ATENRVHARCEET*PADRSKKTPAP-PDARNQP--QPEI 537
               R   R  +    ++    P+P P   + P  +PE+
Sbjct: 63  FGYGRYQTRNHKKMDKEKVPPPPSPHPPLHSLPSSKPEV 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,419
Number of Sequences: 28952
Number of extensions: 314923
Number of successful extensions: 1026
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)