Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0121.Seq
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08980.3 68417.m01481 F-box family protein (FBW2) contains si... 30 1.9
At4g08980.2 68417.m01480 F-box family protein (FBW2) contains si... 30 1.9
At4g08980.1 68417.m01479 F-box family protein (FBW2) contains si... 30 1.9
At3g13060.2 68416.m01628 expressed protein contains Pfam profile... 29 2.5
At3g13060.1 68416.m01627 expressed protein contains Pfam profile... 29 2.5
At1g20150.1 68414.m02520 subtilase family protein similar to sub... 29 3.3
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 28 5.7
At4g39450.1 68417.m05582 expressed protein 28 7.5
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ... 28 7.5
>At4g08980.3 68417.m01481 F-box family protein (FBW2) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 317
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 366 LLLVILRICSSY*R--T*AETWKLSYLEIWSDYLQPSETLSSILPRLLPSAYFTAAHRAS 539
+L V+ R+C ++ R T W+ +E+WS+ S+ L +L L+P + S
Sbjct: 30 VLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRS------AGS 83
Query: 540 RIPVAATRMRSSLLLSFV 593
++ T +R+ + SF+
Sbjct: 84 LRKLSVTGLRNDSIFSFI 101
>At4g08980.2 68417.m01480 F-box family protein (FBW2) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 317
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 366 LLLVILRICSSY*R--T*AETWKLSYLEIWSDYLQPSETLSSILPRLLPSAYFTAAHRAS 539
+L V+ R+C ++ R T W+ +E+WS+ S+ L +L L+P + S
Sbjct: 30 VLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRS------AGS 83
Query: 540 RIPVAATRMRSSLLLSFV 593
++ T +R+ + SF+
Sbjct: 84 LRKLSVTGLRNDSIFSFI 101
>At4g08980.1 68417.m01479 F-box family protein (FBW2) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 317
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 366 LLLVILRICSSY*R--T*AETWKLSYLEIWSDYLQPSETLSSILPRLLPSAYFTAAHRAS 539
+L V+ R+C ++ R T W+ +E+WS+ S+ L +L L+P + S
Sbjct: 30 VLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRS------AGS 83
Query: 540 RIPVAATRMRSSLLLSFV 593
++ T +R+ + SF+
Sbjct: 84 LRKLSVTGLRNDSIFSFI 101
>At3g13060.2 68416.m01628 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 634
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 444 IWSDYLQPSET---LSSILPRLLPSAYFTAAHRASRIPVAATRMRS 572
IWSD+ +PS+ SSI P L P + IP+ + R RS
Sbjct: 231 IWSDWSKPSDMHRHSSSISPALSPQPLGSYGSYGQNIPMGSQRQRS 276
>At3g13060.1 68416.m01627 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 551
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 444 IWSDYLQPSET---LSSILPRLLPSAYFTAAHRASRIPVAATRMRS 572
IWSD+ +PS+ SSI P L P + IP+ + R RS
Sbjct: 231 IWSDWSKPSDMHRHSSSISPALSPQPLGSYGSYGQNIPMGSQRQRS 276
>At1g20150.1 68414.m02520 subtilase family protein similar to
subtilisin-type protease precursor GI:14150446 from
[Glycine max]
Length = 780
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = -2
Query: 424 QVSAYVRQYEEQILSITSRRHRLPDAVLAALAD--EREQHVPGLGAGSPSLDGPAPQLAY 251
Q+ +Y+ E I +I R R + ++ R ++ P + P +
Sbjct: 465 QIMSYINSTREPIATIMPTRSRTGHMLAPSIPSFSSRGPYLLTRSILKPDIAAPGVNILA 524
Query: 250 ISSKNDRNAINRGRPPPIIAPNSLSLSWYHCWHV 149
DRNA G+PPP+ N S + C HV
Sbjct: 525 SWLVGDRNAAPEGKPPPLF--NIESGTSMSCPHV 556
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 240 RTTGTPSTEVVHRRSSRPTACPYRG 166
RT TP+T V S RP ACPY G
Sbjct: 213 RTVKTPAT-VCGPSSDRPYACPYEG 236
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -2
Query: 334 LADEREQHVPGLGAGSPSLDGPAPQLAYISSKNDRNA 224
LA E E HV +GA SPS G Y S+ DR A
Sbjct: 818 LAVEAESHVKNVGAFSPSSIGKDMVNGYSSNLIDRTA 854
>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
GP:3172044:gnl:PID:d1029570:AB010080
Length = 1332
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 66 AVRLPAARRCIAVVEREQTETFLESLLNTCQQWYHDRDKLLGAMIGGG 209
A+ LP C+ V Q ++ S++ TC +++ +GGG
Sbjct: 752 ALALPDEDNCVKVFSSSQAPEYVHSVIATCLGIQEHNVRVITRRVGGG 799
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,655
Number of Sequences: 28952
Number of extensions: 349478
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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