Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0116X.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26810.1 68418.m03199 pectinesterase family protein contains ...    27   3.7  
At5g47430.1 68418.m05844 expressed protein                             27   4.8  
At3g17060.1 68416.m02177 pectinesterase family protein similar t...    26   8.5  

>At5g26810.1 68418.m03199 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 293

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 391 ECHRAATAGVRAGRLXGGFVTSP*REGD 308
           +CH  ATAG  A ++  G++T+  R  D
Sbjct: 156 DCHINATAGALASKVSFGYITAQGRSSD 183


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 404 PSTNGMSQSGD-RRRAGRSPXWRLRDVTLEGR*RHYDVQKQHD 279
           P+   +S S D +R++ R P  R R    E R RH DV ++HD
Sbjct: 679 PTRKNISPSRDSKRKSERYPDERDRQRDRE-RSRHQDVDREHD 720


>At3g17060.1 68416.m02177 pectinesterase family protein similar to
           pectinesterase GB:AAB57669 [Citrus sinensis]; contains
           Pfam profile: PF01095 pectinesterase
          Length = 344

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 329 VTLEGR*RHYDVQKQHDLDPVGNERRIVV 243
           V +EG+  +  VQK  D  PVGN   I+V
Sbjct: 48  VDIEGKGDYTSVQKAIDAVPVGNSNWIIV 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,791
Number of Sequences: 28952
Number of extensions: 135233
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)