Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0099.Seq
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    28   5.3  
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    27   9.3  

>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 168 LQSPSTKLLINDQELGTATLYITENNVIWAEALVHQAIQLRPSIYSIQAYLYMRYN 335
           L SP  ++ +  Q        +     IW ++++H    LRP + + +A    R+N
Sbjct: 181 LLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGTRFN 236


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 707 SASWPLPGRGPSLMRR 660
           ++SWPLP R PS  RR
Sbjct: 202 TSSWPLPSRSPSRARR 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,504
Number of Sequences: 28952
Number of extensions: 253309
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)