Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0086.Seq
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57700.1 68414.m06548 protein kinase family protein contains ...    28   4.5  
At4g28860.1 68417.m04124 casein kinase, putative similar to case...    27   5.9  
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil...    27   7.8  

>At1g57700.1 68414.m06548 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 686

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 333 PHVTSRDNQVTNHSLLRNAKTFTRRLDAQYCRTRYAVSHMADGKQTG*VSD 181
           P  T+ DN     S LR  +++ +R   Q  R   +++   DG Q G + D
Sbjct: 531 PIYTNGDNHPNGSSQLRTQRSYVQRGSGQLSRFSNSMAPTRDGSQFGSMRD 581


>At4g28860.1 68417.m04124 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 414

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  GFNKIHTNGTMPRARTVLPAGN*RR 112
           GF+++H N  MP + ++ PAG  +R
Sbjct: 361 GFDQVHKNMNMPSSTSLSPAGTSKR 385


>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 428

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  QNGSLKNGFNKIHTNGTMPRAR 82
           +NG   NG  K+H NGT+  +R
Sbjct: 407 RNGEAHNGDGKVHQNGTVEASR 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,267,601
Number of Sequences: 28952
Number of extensions: 227854
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)