Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0081.Seq
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63670.1 68414.m07205 expressed protein                             29   2.1  
At3g62020.1 68416.m06966 germin-like protein (GLP10) identical t...    29   2.8  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   6.5  

>At1g63670.1 68414.m07205 expressed protein
          Length = 689

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -2

Query: 387 ALSYITIPLRERDKTSSIPTKNFKRQNLEKNVTDSNYFFIICNKPISVNYLFIEDNCILS 208
           ALS +   L+ER +      ++FK  +L+KN      F +    P + N  F+E+NC  S
Sbjct: 378 ALSSLQTKLKERRQKLEKKRESFKLWSLDKN------FEVFDPNPYNSNLRFLENNCTGS 431

Query: 207 CIVESL 190
              +SL
Sbjct: 432 SEYKSL 437


>At3g62020.1 68416.m06966 germin-like protein (GLP10) identical to
           germin-like protein subfamily 2 member 4 [SP|Q9M263]
          Length = 220

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -2

Query: 411 TMTSMFTSALSYITIPLRE---RDKTSSIPTKNFKRQNLEKNVTDSNYFFIICNKPISVN 241
           T+ S+    L+Y    L++    D+TS I    F  +  E N+T S++FF    KP  VN
Sbjct: 11  TLLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKP-ESNITASDFFFAGIGKPAVVN 69


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 19  FPTRALKFLVKIYIFLKKIFSI*EISINGFINLYY 123
           FP +A   LV ++I+    F   ++ ++GFI+LY+
Sbjct: 80  FPLKAYAVLVFMFIYCLSSFVSLQLWLSGFIDLYF 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,970
Number of Sequences: 28952
Number of extensions: 216931
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)