Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0080.Seq
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont... 31 0.34
At1g03340.1 68414.m00313 expressed protein similar to hypothetic... 29 1.4
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 29 1.4
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 29 1.8
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 29 1.8
At2g22850.1 68415.m02713 bZIP transcription factor family protei... 28 4.2
At5g40070.1 68418.m04861 hypothetical protein contains similarit... 27 5.6
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi... 27 5.6
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C... 27 7.4
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 27 7.4
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 27 7.4
At5g38800.1 68418.m04691 bZIP transcription factor family protei... 27 9.8
At3g20680.1 68416.m02617 expressed protein 27 9.8
At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR cla... 27 9.8
At1g31350.1 68414.m03836 F-box family protein similar to hypothe... 27 9.8
At1g24300.1 68414.m03066 GYF domain-containing protein contains ... 27 9.8
>At4g03260.1 68417.m00445 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 677
Score = 31.5 bits (68), Expect = 0.34
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 50 NDALVADEPLPLANAHALHGVPPML-SSVLPETSQPSSSRPSLFKDDALNHAESKINEDK 226
+D + E + +N+ H P M+ S+ LP + SS + S FK + +H+ S +
Sbjct: 182 DDTSLYGEQMDNSNSQTPHDSPLMVRSNSLPNIADSSSEKSSPFKYSS-HHSRSSDDLHA 240
Query: 227 LQKIDDDKNAHQT 265
L DK+ H+T
Sbjct: 241 LDTRQTDKSVHET 253
>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
protein GB:AAC79114
Length = 385
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 454 VSPGGRRYDAPPRSSYGLFGCLLRKRPP 371
V+PGGR+Y+ P SS+ L LL P
Sbjct: 31 VNPGGRKYEILPESSFNLKSQLLEPLKP 58
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 38 RAYGNDALVADEPLPLANAHALHGVPPMLSSVLPE 142
R GN+A V D+P P+ HA HG PP + PE
Sbjct: 101 RGGGNNATVVDQP-PMG-FHAHHGPPPSYYNPYPE 133
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
Length = 1426
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/93 (22%), Positives = 41/93 (44%)
Frame = +2
Query: 101 LHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNAHQTRVMRV 280
++GVPP+ S P T + P+L + + A+ D+ +++ + N Q V
Sbjct: 1077 INGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREV--EANIKQLSVPPE 1134
Query: 281 LSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRA 379
S + + +L + CL+ L+ WR+
Sbjct: 1135 GSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRS 1167
>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1531
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 186 SSLKRLGREDDGWLVSGNTED 124
S ++RLG + + W+V G+T+D
Sbjct: 1148 SEIRRLGEDPNSWMVGGSTDD 1168
>At2g22850.1 68415.m02713 bZIP transcription factor family protein
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 227
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 89 NAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDK 250
+++ HGVP S L S+ + + +A NH +K+N LQ DD K
Sbjct: 84 DSNLFHGVPSPQSDEL-------DSKNTKIRSNATNHNRNKLNRSVLQVTDDRK 130
>At5g40070.1 68418.m04861 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 157
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 80 PLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINE 220
PLA+ ++ + ++ S+ P S+ S PS F NH ++ +++
Sbjct: 81 PLADHYSPDQISQLIQSLEPHVSKTQSLNPSQFSLFMYNHGDNTLSQ 127
>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
similarity to copper homeostasis factor
[GI:3168840][PMID:9701579] and farnesylated proteins
ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
contains PF00403 Heavy-metal-associated domain
Length = 364
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 233 KIDDDKNAHQTRVMRVLSPTVLLKR 307
K+D D H+ V+ ++SP +LLK+
Sbjct: 69 KVDIDVKQHKVTVIGIISPEILLKK 93
>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase 2C (GI:10432446)
[Nicotiana tabacum]
Length = 416
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 249 LSSSIFCNLSSFILDSAWLSASSLKRLGREDD 154
LSS + C+++ F L S+ L R+ +EDD
Sbjct: 343 LSSQLACDIARFCLREETPSSLDLNRMAQEDD 374
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 229 QFVFVYFGLGMVECVVFEETGS 164
+FVF YFGLG V+ + E GS
Sbjct: 102 EFVFPYFGLGQVQLKLGELKGS 123
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 229 QFVFVYFGLGMVECVVFEETGS 164
+FVF YFGLG V+ + E GS
Sbjct: 314 EFVFPYFGLGQVQLKLGELKGS 335
>At5g38800.1 68418.m04691 bZIP transcription factor family protein
similar to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]; contains PFAM profile: bZIP
transcription factor PF00170
Length = 165
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 80 PLANAHALHGVPPMLSSVLPETSQPSSSRPSLF 178
P N +LHG PP S +P +S P+ F
Sbjct: 3 PSTNIFSLHGCPPSYLSHIPTSSPFCGQNPNPF 35
>At3g20680.1 68416.m02617 expressed protein
Length = 338
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 122 LSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNA 256
L S LP PSSS P L K++A+N A++ + ++ +++ K A
Sbjct: 60 LCSSLPS---PSSSSPPLSKEEAINQAKTCLLSCLIKPLNNPKLA 101
>At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 709
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 366 IKVKLNRQFEHRSNRFKFVVLFSRTVGLRT 277
+ VK+N++ H S +FK +LF V T
Sbjct: 524 VSVKVNQKLLHTSTKFKACILFENEVDNET 553
>At1g31350.1 68414.m03836 F-box family protein similar to
hypothetical protein GB:AAF24593 GI:6692128 from
[Arabidopsis thaliana] ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 395
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 62 VADEPLPLANAHALHGVPPMLSSVLPETSQPS 157
VA EP + N G+ P+ VLP SQP+
Sbjct: 362 VAAEPAKIWNVEIPDGLEPVSVHVLPRMSQPN 393
>At1g24300.1 68414.m03066 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1417
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 186 SSLKRLGREDDGWLVSGNTED 124
S +R+G + + W++ G TED
Sbjct: 1074 SESRRMGEDSNSWMLGGTTED 1094
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,765
Number of Sequences: 28952
Number of extensions: 198733
Number of successful extensions: 694
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -