Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0076.Seq
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 30 1.6
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 29 2.8
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 29 2.8
At1g30510.2 68414.m03732 ferredoxin--NADP(+) reductase, putative... 29 2.8
At5g23910.1 68418.m02808 kinesin motor protein-related 29 3.6
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 3.6
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 28 4.8
At5g55540.1 68418.m06919 expressed protein 28 4.8
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.8
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 6.4
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 6.4
At1g64950.1 68414.m07362 cytochrome P450, putative similar to cy... 28 6.4
At1g64940.1 68414.m07361 cytochrome P450, putative similar to cy... 28 6.4
At1g30510.1 68414.m03731 ferredoxin--NADP(+) reductase, putative... 28 6.4
At3g44290.1 68416.m04756 no apical meristem (NAM) family protein... 27 8.4
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 38 YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 202
YDR ++ D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 32 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 196
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 32 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 196
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328
>At1g30510.2 68414.m03732 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
SP|P41345 Ferredoxin--NADP reductase, root isozyme,
chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
sativa}, ferredoxin-NADP reductase precursor [Zea mays]
GI:500751
Length = 382
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = +3
Query: 198 ERYRPTRRSVFPELLSTYPTPSRFTTTLSLPLR------GLRYPATVTCLSIARSTATPR 359
E R RRSVF + S ++++L+L + G RYP+T C+S+ +++++
Sbjct: 17 ENQRSLRRSVFKQNNSISFNSKSWSSSLALNQKTTSIRDGKRYPSTTICMSVQQTSSSKV 76
Query: 360 ALS 368
+S
Sbjct: 77 TVS 79
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 261 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 392
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 498 PSTGVPISLRTLPKGPGLPHHRAYRTPHRPP 590
PST P + + P P PHH+ TP PP
Sbjct: 136 PSTPKPPTTKPPPSTPKPPHHKPPPTPCPPP 166
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 508 PVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 383
PVD VEM+ L V+ S S W +WP+ ++ R
Sbjct: 299 PVDAVAAVEMIKNQLADVKAFASKSKNGWS-YEWPLAVDEER 339
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 235 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 137
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -2
Query: 451 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 329
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 300 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 413
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 326 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 415
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
>At1g64950.1 68414.m07362 cytochrome P450, putative similar to
cytochrome P450 89A2 (CYPLXXXIX) (SP:Q42602)
[Arabidopsis thaliana];similar to cytochrome P450
(GI:438242) [Solanum melongena]
Length = 510
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 218 PQRFSRTPVDLPYSKSIYDDPIAAAERITVPGYRYLPVHREIY 346
P+RF VD+ S+ I P A RI PG +H E Y
Sbjct: 425 PERFMEEAVDITGSRGIKMMPFGAGRRI-CPGIGLAMLHLEYY 466
>At1g64940.1 68414.m07361 cytochrome P450, putative similar to
cytochrome p450 GI:438242 from [Solanum melongena]
Length = 511
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 218 PQRFSRTPVDLPYSKSIYDDPIAAAERITVPGYRYLPVHREIY 346
P+RF VD+ S+ I P A RI PG +H E Y
Sbjct: 426 PERFMEEAVDITGSRGIKMMPFGAGRRI-CPGIGLAMLHLEYY 467
>At1g30510.1 68414.m03731 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
SP|P41345 Ferredoxin--NADP reductase, root isozyme,
chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
sativa}, ferredoxin-NADP reductase precursor [Zea mays]
GI:500751
Length = 381
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Frame = +3
Query: 198 ERYRPTRRSVFPELLSTYPTPSRFTTTLSLPLR------GLRYPATVTCLSIARSTATPR 359
E R RRSVF ++ + S ++++L+L + G RYP+T C+S+ +++++
Sbjct: 17 ENQRSLRRSVFKNNSISFNSKS-WSSSLALNQKTTSIRDGKRYPSTTICMSVQQTSSSKV 75
Query: 360 ALS 368
+S
Sbjct: 76 TVS 78
>At3g44290.1 68416.m04756 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 335
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 469 CLVGVEGINSTSHASWHVVDWPVII 395
C +G+ I S + A W VV W +++
Sbjct: 302 CFIGIYSIKSINRARWDVVVWLLVM 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,375,939
Number of Sequences: 28952
Number of extensions: 345753
Number of successful extensions: 1073
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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