Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0069.Seq
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40900.1 68415.m05047 nodulin MtN21 family protein similar to...    29   4.5  
At3g27900.1 68416.m03481 hypothetical protein                          28   7.9  

>At2g40900.1 68415.m05047 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 394

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 195 PRADYIDASNLIYFFSSSWASFGT-QTSRLKVY 100
           P ADY+ A+  +   S SWASF   Q + LK Y
Sbjct: 173 PTADYLKAAVFLLLASLSWASFFVLQAATLKKY 205


>At3g27900.1 68416.m03481 hypothetical protein
          Length = 244

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 236 NG*RKSVIKLSTIMCIHIRIYNTYKKYIVNRKYRRLD 346
           NG  + VIK S I+C+   ++ T +  ++N K R LD
Sbjct: 186 NGFAREVIK-SNILCLWKSLFETSQPKVINLKNRTLD 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,459,972
Number of Sequences: 28952
Number of extensions: 234562
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)