Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0066.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26650.1 68414.m03245 expressed protein                             29   3.4  
At5g55960.1 68418.m06979 expressed protein                             28   5.9  

>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -3

Query: 678 FPSFVTVILLSK-AFVYFIEYEFLNAI*AFLSYIKIISPYWALLENLIVFEI*IE---FC 511
           FP F+TV LLSK A VY ++  +   +     ++ I+   W  +    V+   +    F 
Sbjct: 111 FPVFITVSLLSKAAVVYSVDCSYSREVVDISKFLVILQKIWRRVVFTYVWICILIVGCFT 170

Query: 510 LFCIRIHGFC 481
            FC+ +   C
Sbjct: 171 FFCVLLVAIC 180


>At5g55960.1 68418.m06979 expressed protein
          Length = 648

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 723 LVIKGTLLYLHKRVKFPSFVTVILLSKAFVYFIEYEFLNAI*AFLSYIKIISPYW 559
           L I G LL   +   F   +T +L     +Y I + +++ + AF+S +  I PYW
Sbjct: 501 LAISGVLLATAEIAFFQGCLTWLLFR---LYNIHFLYMSTVLAFISALLPIFPYW 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,708,724
Number of Sequences: 28952
Number of extensions: 283995
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)