Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0065.Seq
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 101 7e-22
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 50 2e-06
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 50 2e-06
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 47 1e-05
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 44 2e-04
At3g56570.1 68416.m06290 SET domain-containing protein low simil... 33 0.22
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro... 30 1.5
At5g09330.1 68418.m01081 no apical meristem (NAM) family protein... 30 2.0
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 29 2.7
At3g44070.1 68416.m04721 expressed protein ; expression supporte... 29 2.7
At3g03750.2 68416.m00381 SET domain-containing protein low simil... 29 2.7
At1g75800.1 68414.m08805 pathogenesis-related thaumatin family p... 29 3.5
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 29 4.6
At1g66310.1 68414.m07530 F-box family protein contains F-box dom... 29 4.6
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi... 29 4.6
At5g65400.1 68418.m08225 expressed protein contains Pfam profile... 28 6.1
At2g42770.1 68415.m05296 peroxisomal membrane 22 kDa family prot... 28 6.1
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR... 28 8.1
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 28 8.1
At4g14060.1 68417.m02171 major latex protein-related / MLP-relat... 28 8.1
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 28 8.1
At2g01520.1 68415.m00076 major latex protein-related / MLP-relat... 28 8.1
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 101 bits (241), Expect = 7e-22
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = +3
Query: 510 QMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFY 689
+M+ HLPSP AQ+YR+E LYEGP DD+ A I++CDP PLM+YVSKM+P SDKGRF+
Sbjct: 334 EMMIFHLPSPHTAQRYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFF 393
Query: 690 AFWTRFSLARLLPDKSSHHGTKLYTGKKEDLY 785
AF F+ K G G+K+DLY
Sbjct: 394 AFGRVFAGKVSTGMKVRIMGPNYIPGEKKDLY 425
Score = 97.5 bits (232), Expect = 9e-21
Identities = 46/89 (51%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Frame = +2
Query: 35 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 214
YQTF R++EN NVI+ATY D +G+V+V P KG+V F +GLHGWAFTL F++MYA K
Sbjct: 175 YQTFSRVIENANVIMATYEDP--LLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232
Query: 215 FKIDLVKLMNRLWEKTF--STLKRRSGQN 295
F + K+M RLW + F ++ SG+N
Sbjct: 233 FGVVESKMMERLWGENFFDPATRKWSGKN 261
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/97 (38%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Frame = +1
Query: 241 EQVMGENFFNPQTKKWSKQKDDDN--KRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKI 414
E++ GENFF+P T+KWS + KR F + +PI ++ M +K+++ +L K+
Sbjct: 242 ERLWGENFFDPATRKWSGKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLAKL 301
Query: 415 GVTIKHEDSDKDGKALLKVVMRSWLPAGEALLR*LPF 525
GV++K+++ + GK L+K VM++WLPA ALL + F
Sbjct: 302 GVSMKNDEKELMGKPLMKRVMQTWLPASTALLEMMIF 338
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 35 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 214
Y + +E +N I+ + G + +DP+ G+V F SG GW+FTL+ F++MYA
Sbjct: 286 YYKLRHTIEVINNHISAASTTAGDLP--LIDPAAGNVCFASGTAGWSFTLQSFAKMYAKL 343
Query: 215 FKI--DLVKLMNRLW 253
+ D+ K +RLW
Sbjct: 344 HGVAMDVDKFASRLW 358
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 513 MIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYA 692
M+ H+PSP A +++ Y G D + CDP PLM+ V+K+ P SD F
Sbjct: 447 MLVKHIPSPREAAARKVDHSYTGTKDSPIYESMVECDPSGPLMVNVTKLYPKSDTSVFDV 506
Query: 693 FWTRFS 710
F +S
Sbjct: 507 FGRVYS 512
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/81 (19%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 244 QVMGENFFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 420
++ G+ +++ T+ + + +R+F ++L+P+YK++ ++ K+ ++ L ++GV
Sbjct: 356 RLWGDVYYHSDTRVFKRSPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGV 415
Query: 421 TIKHEDSDKDGKALLKVVMRS 483
T+ + + + LL++ S
Sbjct: 416 TLSNSAYKLNVRPLLRLACSS 436
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 35 YQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 214
Y + +E +N I+ + G + +DP+ G+V F SG GW+FTL+ F++MYA
Sbjct: 286 YYKLRHTIEVINNHISAASTTAGDLP--LIDPAAGNVCFASGTAGWSFTLQSFAKMYAKL 343
Query: 215 FKI--DLVKLMNRLW 253
+ D+ K +RLW
Sbjct: 344 HGVAMDVDKFASRLW 358
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 513 MIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYA 692
M+ H+PSP A +++ Y G D + CDP PLM+ V+K+ P SD F
Sbjct: 447 MLVKHIPSPREAAARKVDHSYTGTKDSPIYESMVECDPSGPLMVNVTKLYPKSDTSVFDV 506
Query: 693 FWTRFS 710
F +S
Sbjct: 507 FGRVYS 512
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/81 (19%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 244 QVMGENFFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 420
++ G+ +++ T+ + + +R+F ++L+P+YK++ ++ K+ ++ L ++GV
Sbjct: 356 RLWGDVYYHSDTRVFKRSPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGV 415
Query: 421 TIKHEDSDKDGKALLKVVMRS 483
T+ + + + LL++ S
Sbjct: 416 TLSNSAYKLNVRPLLRLACSS 436
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +2
Query: 122 VDPSKGSVGFGSGLHGWAFTLKQFSEMYADKFKI--DLVKLMNRLW 253
+DP+ G+V F SG GW+FTL+ F+ MYA + D+ K +RLW
Sbjct: 299 IDPAAGNVCFASGTAGWSFTLQSFARMYAKLHGVAMDVDKFASRLW 344
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 513 MIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYA 692
M+ H+PSP A +++ Y G D + CDP PLM+ V+K+ P SD F
Sbjct: 433 MLVKHIPSPREAAARKVDHSYTGTKDSPIYESMVECDPSGPLMVNVTKLYPKSDTSVFDV 492
Query: 693 FWTRFS 710
F +S
Sbjct: 493 FGRVYS 498
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/81 (20%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +1
Query: 244 QVMGENFFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 420
++ G+ +++P T+ ++ +R+F ++L+P+YK++ ++ K+ ++ L ++GV
Sbjct: 342 RLWGDVYYHPDTRVFNTSPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGV 401
Query: 421 TIKHEDSDKDGKALLKVVMRS 483
T+ + + + LL++ S
Sbjct: 402 TLSNSAYKLNVRPLLRLACSS 422
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Frame = +1
Query: 241 EQVMGENFFNPQTKKWSKQKD----DDNKRSFCMYVLDPIYKVFDAIMK--FKKEEIDDL 402
+ + G ++ P+TK +K+ K F +VL+P+++V++A + K ++ +
Sbjct: 244 KSLWGPRYYIPKTKMIVGKKNLSAGSKAKPMFVQFVLEPLWQVYEAALDPGGDKAVLEKV 303
Query: 403 LKKIGVTIK-HEDSDKDGKALLKVVMRSWLPAGEALL 510
+K ++I E +KD K +L+ VM WLP +A+L
Sbjct: 304 IKSFNLSIPPRELQNKDPKNVLQSVMSRWLPLSDAVL 340
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 113 EVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLW 253
EV P KG+V F L GW F + +F+ YA K L LW
Sbjct: 201 EVTFQPQKGNVVFVCALDGWGFGIAEFANFYASKLGASATALQKSLW 247
>At3g56570.1 68416.m06290 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 531
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 597 LHHRGVPRITSPYDISGPLQVMVNEWQSSEQSFTSRQPRA 478
LH G + +PYDI +V EW +S SFTSR RA
Sbjct: 319 LHRYGFTELDNPYDIVNIDLELVTEWSTS--SFTSRYTRA 356
>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
protein low similarity to SP:P80728 Mavicyanin
{Cucurbita pepo}; contains Pfam profile PF02298:
Plastocyanin-like domain
Length = 163
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 159 PDPKPTEPLLGSTRTSPMGPPSSLYVAIMTLTFSTI 52
P P P+ P ++ T+P+ PP+++ AI+ F +
Sbjct: 126 PQPPPSAPTNFTSTTTPLIPPNAITAAILIFAFKAL 161
>At5g09330.1 68418.m01081 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 489
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = -1
Query: 783 TSPLSFQCKVWSHDASFCPVTTLPEKNASKRRRNDLCRRSAPSCSRTSSVGLQDHSS*YQ 604
T+P + Q + H A F P T L + A + L +AP +T GLQD ++ +
Sbjct: 363 TAPFNHQTGLQDHTAPFNPQTGLQDHTAPFNHQTGLQDLTAPFNPQT---GLQDLTAPFN 419
Query: 603 WQLHHRGVPRITSPYDISGPLQ 538
Q G+ +TSP++ LQ
Sbjct: 420 PQ---TGLHDLTSPFNPQTGLQ 438
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 525 HLPSPVVAQKYRMEMLYEGPHDDEAA-IGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFWT 701
H+P P K ++ ML + H +EA IG++S D EA + +K + +F+AF
Sbjct: 57 HVPRP----KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLA 112
Query: 702 RFSLARLLP 728
S+ + +P
Sbjct: 113 SESVIKQIP 121
>At3g44070.1 68416.m04721 expressed protein ; expression supported
by MPSS
Length = 276
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -3
Query: 307 HHPFVLTTSSFEG*KSFLP*PVHKLDKVNLE-----FVSIHLRELFEGESPPMKTR 155
H P ++ + +F K+ P + L +N F+++H REL GE+PP+ R
Sbjct: 37 HVPSIIFSDTFNTLKTLKPMSFYHLSGLNRRQTLYGFLNLHGRELHVGENPPVLLR 92
>At3g03750.2 68416.m00381 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 354
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 307 DNKRSFCMYVLDPIYKVFDAIMKFKKEEI--DDLLKKIGVTIKHEDSDKDGKALLKVVMR 480
D K+ +C+Y D + K I ++ E + D+ ++ + K + ALL V+R
Sbjct: 198 DEKKGWCLYA-DQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALL--VVR 254
Query: 481 SWLPAGEALLR 513
LP+G+A LR
Sbjct: 255 EHLPSGQACLR 265
>At1g75800.1 68414.m08805 pathogenesis-related thaumatin family
protein similar to receptor serine/threonine kinase PR5K
[Arabidopsis thaliana] GI:1235680; contains Pfam
profile: PF00314 Thaumatin family
Length = 330
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 159 PDPKPTEPLLGSTRTSPMGPPSSLYVAIMT 70
PDPKPT P G++ T+P G S+ + + T
Sbjct: 262 PDPKPTTP-TGTSSTTPAGDSSTTWSPVDT 290
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 663 PTSDKGRFYAFWTRFSLARLLPDKSSH 743
P D +FY FW F R PD+ H
Sbjct: 241 PLKDVDKFYNFWYAFKSWREFPDEEEH 267
>At1g66310.1 68414.m07530 F-box family protein contains F-box domain
Pfam:PF00646
Length = 442
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 66 LTSL*PHITMMVVPWVRCVSTLARALLVSGLVFMGGLS 179
LTSL P + ++V+ WV+ + LA +L+SG + + L+
Sbjct: 161 LTSL-PCVKVIVLEWVKFANDLALEMLISGCLVLESLT 197
>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 970
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 143 VGFGSGLHGWAFTLKQFSEMYADKFKIDL 229
+G G G+HGWA L+ E+ + +D+
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNALMDM 336
>At5g65400.1 68418.m08225 expressed protein contains Pfam profile:
PF03959 domain of unknown function (DUF341) contains
Pfam profile: PF03959 domain of unknown function
(DUF341)
Length = 252
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +1
Query: 151 RVWSSWVGFHPQTIL*DVC*QIQD*PCQAYEQVMGENFFNPQTKKW-SKQKDDDNKRSF- 324
R+ + +G P TIL D+ D P A + E FF+P +W K R+F
Sbjct: 43 RILQAGIGKWPDTILRDLDLDFLDAPFPATGKSDVERFFDPPYYEWYQANKGFKEYRNFE 102
Query: 325 -CM-YVLDPIYK--VFDAIMKFKK 384
C+ Y+ D + K FD ++ F +
Sbjct: 103 ECLAYIEDYMIKNGPFDGLLGFSQ 126
>At2g42770.1 68415.m05296 peroxisomal membrane 22 kDa family protein
contains Mpv17 / PMP22 family domain, Pfam:PF04117
Length = 232
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/87 (28%), Positives = 37/87 (42%)
Frame = +2
Query: 101 GPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWEKTFSTLKR 280
G G+ R S SV G+ F LKQ A F D + ++ W+K + LK+
Sbjct: 29 GDRGKKRNSGSSDSVDVSRDAGGYRFPLKQAVTAGALTFTGDTIAQLSGRWKKR-TALKQ 87
Query: 281 RSGQNKRMMTTNVHFACTFWILSTRCS 361
S + N+ F+ WI + R S
Sbjct: 88 SSSELDEGELWNI-FSEHDWIRALRMS 113
>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1190
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 742 CELLSGNNLAREKRVQKA*KRPLSEVGTILLTYIISGASGSQLLIPMAASSSW-GPSYNI 566
C++LS +A +Q S +GT+ + +++ G + L +A +SW GP I
Sbjct: 263 CDILSTKRVALMS-IQNGANLIRSRLGTLKVLFVLDGVDKVEQLHALAKEASWFGPGSRI 321
Query: 565 SI 560
I
Sbjct: 322 II 323
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +2
Query: 149 FGSGLHGWAFTLKQFSEMYADKFKIDLVKLMN---RLWE-------KTFSTLKRRSGQNK 298
FG LH W F+L+ F K + +LV +M L+ +F L+RRS ++K
Sbjct: 313 FGRQLHLWRFSLEDFENAVCHK-ESNLVLIMEVHASLFRFLINERGDSFKALQRRSRKSK 371
Query: 299 RMMTTNVHFACTF 337
+ T + C F
Sbjct: 372 ITLITWAEYLCDF 384
>At4g14060.1 68417.m02171 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294060] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 151
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 271 PQTKKWSKQKDDDNKRSFCM----YVLDPIYKVFDAIMKFKKEEIDDLLKKIGVT-IKHE 435
P+ K ++ DD+N + +V++ + KV+D I++F ++ DD++ KI +T K
Sbjct: 66 PEMFKERREIDDENMAVTFVGLEGHVMEQL-KVYDTILQFIQKSPDDIVCKITMTWEKRA 124
Query: 436 DSDKDGKALLKVV 474
D + +K+V
Sbjct: 125 DDSPEPSNYMKLV 137
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 128 GRHAPHPWDHHHR 90
G HAPHP+D+H R
Sbjct: 375 GPHAPHPYDYHPR 387
>At2g01520.1 68415.m00076 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:169000] contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 151
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +1
Query: 271 PQTKKWSKQKDDDNK----RSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIKHED 438
P+ K ++ DD+N R +V++ + KV+D I +F ++ DD++ KI + + ++
Sbjct: 66 PEVFKERREIDDENMAVTFRGLEGHVMEQL-KVYDVIFQFIQKSPDDIICKITMIWEKQN 124
Query: 439 SD 444
D
Sbjct: 125 DD 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,985,974
Number of Sequences: 28952
Number of extensions: 432948
Number of successful extensions: 1448
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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