Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0064.Seq
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s... 101 3e-22
At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger) fa... 31 0.63
At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger) fa... 31 0.63
At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger) fa... 31 0.63
At1g54300.1 68414.m06190 hypothetical protein 30 1.5
At3g29450.1 68416.m03699 hypothetical protein 29 3.4
At5g62600.1 68418.m07856 transportin-SR-related contains weak si... 28 4.4
At2g44640.1 68415.m05556 expressed protein 28 4.4
At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein ... 28 5.9
At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein ... 28 5.9
>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
GI:6273457; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 572
Score = 101 bits (243), Expect = 3e-22
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Frame = +3
Query: 3 RMNWMLHFGQPPRYAPDVKIIQVEISPARIS-QQQEIRISSTLRH*TFYRSSCKKVVRKE 179
R+NW+LHFG+ P++ DVK I V++S I ++ + I + + ++ +
Sbjct: 285 RLNWLLHFGESPKWDKDVKFILVDVSEEEIELRKPHLGIVGDAKT---VIGLLNREIKDD 341
Query: 180 VLIATSKQQLVAGTETETKSKHRICEAQASSTAVPLNYYTVFKTVQQGI----PKDSIIV 347
V + K E Q + VP N+ T + ++ I ++V
Sbjct: 342 PFCLGKSNSWVESISKKAKENGEKMEIQLAKDVVPFNFLTPMRIIRDAILAVEGPSPVVV 401
Query: 348 SEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAM 476
SEGANTMD+GR +L+ PR RLDAGT+GTMGVG G+ IAAA+
Sbjct: 402 SEGANTMDVGRSVLVQKEPRTRLDAGTWGTMGVGLGYCIAAAV 444
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 509 ICVEGDSAFGFSGMVXET 562
+ VEGDS FGFS M ET
Sbjct: 452 VAVEGDSGFGFSAMEVET 469
>At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 233 KKQTPNL*G-SSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWP-RFIAQQSSE 406
+++ P+ G SS Q+ +T + +SS+ + R N +RR+ + +WP R SS
Sbjct: 231 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSS 290
Query: 407 TQAR 418
TQ R
Sbjct: 291 TQNR 294
>At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 233 KKQTPNL*G-SSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWP-RFIAQQSSE 406
+++ P+ G SS Q+ +T + +SS+ + R N +RR+ + +WP R SS
Sbjct: 231 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSS 290
Query: 407 TQAR 418
TQ R
Sbjct: 291 TQNR 294
>At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 233 KKQTPNL*G-SSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWP-RFIAQQSSE 406
+++ P+ G SS Q+ +T + +SS+ + R N +RR+ + +WP R SS
Sbjct: 231 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSS 290
Query: 407 TQAR 418
TQ R
Sbjct: 291 TQNR 294
>At1g54300.1 68414.m06190 hypothetical protein
Length = 314
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 381 GLLLNNHPRHRLDAGTFGTMGVGPG-FAIAAAMWCRD-YAP 497
G +NN P+H G G +GVG G F++A W R+ Y+P
Sbjct: 175 GFNVNNGPQHHFSQG-IGGVGVGEGNFSMANGGWQRNSYSP 214
>At3g29450.1 68416.m03699 hypothetical protein
Length = 522
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 546 PEKPKAESPSTQIHVYQVHSLGTTLLLQ 463
P KP+ +S T +H YQV T L +Q
Sbjct: 454 PRKPRKKSNMTNLHHYQVECFNTVLDMQ 481
>At5g62600.1 68418.m07856 transportin-SR-related contains weak
similarity to transportin-SR (GI:5052414) [Homo sapiens]
Length = 958
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 330 KDSIIVSEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRD 488
+D+II+ GA I L P RLD T+ + + + + A W ++
Sbjct: 834 RDNIIIPRGATITRILIASLAGALPSSRLDTVTYSLLALTRTYRLQAVSWAKE 886
>At2g44640.1 68415.m05556 expressed protein
Length = 451
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 115 LAVHSDIRPFTEALVKRLSERKFSLQPQNNSWWQGLKQKQKANTEFVRLK 264
L + + P ++ + S L P +N+WW GL + K F +K
Sbjct: 60 LGIIPSLAPASDKRLGSFSLNSLLLSPSSNNWWLGLVGQFKPKKLFADIK 109
>At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 316
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +2
Query: 263 SKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWPRFIAQQSSETQARCWYIWHY 439
SK+ CST ++ + + ++H N C R ++H W + + + +WH+
Sbjct: 158 SKKECSTCKIP---KPARSKHCSICNRCVARFDHHCGWMNNCIGERNTKYFMAFLLWHF 213
>At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 397
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +2
Query: 263 SKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWPRFIAQQSSETQARCWYIWHY 439
SK+ CST ++ + + ++H N C R ++H W + + + +WH+
Sbjct: 158 SKKECSTCKIP---KPARSKHCSICNRCVARFDHHCGWMNNCIGERNTKYFMAFLLWHF 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,021
Number of Sequences: 28952
Number of extensions: 279066
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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