Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0046.Seq
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei...    31   1.1  
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei...    31   1.1  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    30   1.5  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         30   1.9  
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)...    29   3.4  
At2g03610.1 68415.m00321 F-box family protein contains F-box dom...    29   4.4  
At5g56550.1 68418.m07057 expressed protein                             28   5.9  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    28   5.9  

>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 824

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/94 (27%), Positives = 42/94 (44%)
 Frame = +2

Query: 392 RIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPTVSAMTLTLLSFWCPYAASRI 571
           R R D+   +HR   +VPR     P ++    +YG PI T++  TL   S    Y A R 
Sbjct: 359 RERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETMTQETLRGQS--ADYLAHR- 415

Query: 572 ASTIFPSITSQPRSSLDAATSRACTTPVRRPSPT 673
               + ++ + P S   +A+     T   +P P+
Sbjct: 416 ----YSTLDTHPHSFTTSAS--MANTATMKPPPS 443


>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 857

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/94 (27%), Positives = 42/94 (44%)
 Frame = +2

Query: 392 RIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPTVSAMTLTLLSFWCPYAASRI 571
           R R D+   +HR   +VPR     P ++    +YG PI T++  TL   S    Y A R 
Sbjct: 359 RERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETMTQETLRGQS--ADYLAHR- 415

Query: 572 ASTIFPSITSQPRSSLDAATSRACTTPVRRPSPT 673
               + ++ + P S   +A+     T   +P P+
Sbjct: 416 ----YSTLDTHPHSFTTSAS--MANTATMKPPPS 443


>At2g17930.1 68415.m02076 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF02259 FAT domain, PF00454
           Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
           domain
          Length = 3795

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -3

Query: 737 LRVKREQVHVILDAELLVKWLRLEKAFLPE*CTHARLPRPVNFLADS**KERLWMLSATL 558
           ++V  E    + D + L+K L +    +    THA LPRP  F      ++ +W  S  L
Sbjct: 418 VQVPVEHSKEVNDCKNLIKTLVMGMKTIIWSITHAHLPRPQGFKGMR--EDEVWKASGVL 475

Query: 557 RRGTKSLAM 531
           + G   LA+
Sbjct: 476 KSGVHCLAL 484


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +2

Query: 473 TIYSYSYGEPIPTVSAMTLTLLSFWCPYA-----ASRIASTIFPSITSQPRSSLDAATSR 637
           +IYS     P  T S M        CPY      +SRI ST+  S+TS P S     TS 
Sbjct: 17  SIYS-DVRRPATTPSKMAAFSALSLCPYTFTFRQSSRIKSTVSCSVTSAPAS----GTSS 71

Query: 638 ACTTPVRR 661
           +  TP RR
Sbjct: 72  SSKTPRRR 79


>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
           identical to transcription factor (MYB98) GI:15375282
           from [Arabidopsis thaliana]
          Length = 427

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 243 HHVVGSGSAHPWSSVSWTESLTDAA--QHWPYLPSMTSCAPKQPRL 374
           HH  GS S+HP  SV  T S  + A  +H  Y  +M      +P L
Sbjct: 59  HHHHGSSSSHPLLSVQTTSSCINNAPFEHCSYQENMVDFYETKPNL 104


>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 216

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 301 DSVQLTEDHGWADPDPTT*CGTSGYVTSRVT 209
           DS+   ED  W D D  + CG     TSR+T
Sbjct: 166 DSICFVEDDLWPDFDRPSNCGIFNLATSRIT 196


>At5g56550.1 68418.m07057 expressed protein
          Length = 172

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 589 FYHESAKKFTGRGNLACVHYSGKKAFSNRSHFTRSSASRMT 711
           FY   ++ FT  GN+  +    K+ F +R++  +  +SR T
Sbjct: 94  FYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSRST 134


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 365 LLRSARSHRRQIWPVLGGVGK 303
           ++R AR  RR +WPVL   G+
Sbjct: 613 IVRKARIQRRSVWPVLTSAGR 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,273
Number of Sequences: 28952
Number of extensions: 319610
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)