Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0021.Seq
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02500.1 68415.m00189 expressed protein contains Pfam profile...    33   0.21 

>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
           PF01128 uncharacterized protein family UPF0007;
           identical to GP:12697583 2-C-methyl-D-erythritol
           4-phosphate cytidyltransferase {Arabidopsis thaliana};
           identical to cDNA
           4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
           (ISPD)  GI:7385140
          Length = 302

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 305 GIIFSKIFINYILKFKSNQLLWFSITCRFDRLDFQCKENKH-----LILMISC 448
           G I S  F+   LK K N  LWFS   +  +LDF  + N+      L+L I C
Sbjct: 9   GFITSPTFLCPKLKVKLNSYLWFSYRSQVQKLDFSKRVNRSYKRDALLLSIKC 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,252,250
Number of Sequences: 28952
Number of extensions: 258024
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)