Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 111 2e-25
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 109 1e-24
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 106 8e-24
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 103 6e-23
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 103 6e-23
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 82 3e-16
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 30 1.1
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i... 27 7.7
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 111 bits (268), Expect = 2e-25
Identities = 54/119 (45%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA-AGVASD 342
QFQ +RA++Q NP +L +LQ++G+ NP L+++I HQ F+R++NEPV +G
Sbjct: 298 QFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 357
Query: 341 ENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
+ A + QPQ IQV+ +++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 358 QMAAGMPQPQ-----AIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLL 411
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 109 bits (262), Expect = 1e-24
Identities = 53/126 (42%), Positives = 84/126 (66%), Gaps = 2/126 (1%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339
QFQ +RA++Q NP +L +LQ++G+ NP L+++I +HQ F+R++NEPV +E
Sbjct: 261 QFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-------GEE 313
Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS- 162
NV ++Q + + V+ +++EAIERL+ +GF MV++ +FAC KNE LAAN+LL
Sbjct: 314 NV--MEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDH 371
Query: 161 -QNFDD 147
F+D
Sbjct: 372 MHEFED 377
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 106 bits (255), Expect = 8e-24
Identities = 49/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339
QFQQ+R+++ NP +L +LQ++G+ NP LL++I ++Q F+++LNEP SD
Sbjct: 249 QFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYE------GSDG 302
Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQ 159
+V QP + + V+ +++E+IERL+A+GF +VI+A+ +C++NE LAAN+LL
Sbjct: 303 DVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEH 362
Query: 158 NFD 150
+ D
Sbjct: 363 SAD 365
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 103 bits (248), Expect = 6e-23
Identities = 49/123 (39%), Positives = 80/123 (65%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339
QFQQ+R ++ NP +L +LQ++G+ NP LL++I ++Q F++++NEP SD
Sbjct: 246 QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYE------GSDG 299
Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQ 159
QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL
Sbjct: 300 EGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 359
Query: 158 NFD 150
+ D
Sbjct: 360 SGD 362
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 103 bits (248), Expect = 6e-23
Identities = 49/123 (39%), Positives = 80/123 (65%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339
QFQQ+R ++ NP +L +LQ++G+ NP LL++I ++Q F++++NEP SD
Sbjct: 252 QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYE------GSDG 305
Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQ 159
QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL
Sbjct: 306 EGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 365
Query: 158 NFD 150
+ D
Sbjct: 366 SGD 368
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 81.8 bits (193), Expect = 3e-16
Identities = 40/103 (38%), Positives = 66/103 (64%)
Frame = -1
Query: 458 QQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQNVIQVSA 279
Q++G+ NP LL++I ++Q F++++NEP SD QP+ + I V+
Sbjct: 252 QELGKQNPQLLRLIQENQAEFLQLVNEPYE------GSDGEGDMFDQPEQEMPHAINVTP 305
Query: 278 QDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFD 150
++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL + D
Sbjct: 306 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGD 348
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = -1
Query: 368 PSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNE 189
PS + VA+ Q QN + + + I +L LGF VIQA E NE
Sbjct: 346 PSGFTEKKNNTVANPTSQQPKRQNTSE-GPEFEAKIAKLVELGFSRDSVIQALKLFEGNE 404
Query: 188 NLAANFL 168
AA FL
Sbjct: 405 EQAAGFL 411
>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
thaliana] GI:22212705; contains Pfam profile PF03031:
NLI interacting factor
Length = 1241
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1
Query: 440 NPALLQVISQHQEAFVRMLNEPVNPSA----AGVASDENVADIQQPQLG 306
N Q +S +Q+ + +N+ ++ SA AG +S+ENV + QP G
Sbjct: 278 NDHFSQFLSFNQKNEIETMNQDLSRSAIAVFAGTSSEENVNQMTQPSNG 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,777
Number of Sequences: 28952
Number of extensions: 147272
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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