Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A07f
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22080.1 68414.m02761 hypothetical protein                          28   2.5  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    28   3.3  
At4g22590.1 68417.m03259 trehalose-6-phosphate phosphatase, puta...    27   4.4  
At3g55100.1 68416.m06119 ABC transporter family protein ATP-bind...    27   7.6  
At3g23740.1 68416.m02985 expressed protein                             27   7.6  

>At1g22080.1 68414.m02761 hypothetical protein
          Length = 475

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 174 LFSKGPAATLRRSSGVKARPKCWSNRRRGRLEPKSSKKYGSND 46
           L  + P A L+R    +  PK    RRR R+   SSK + + D
Sbjct: 305 LMDEAPRANLKRKQEQQDEPKRSKKRRRQRVARSSSKLHSNLD 347


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
            protein contains protein kinase domain, Pfam:PF00069;
            contains serine/threonine protein kinase domain,
            INTERPRO:IPR002290
          Length = 1296

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 180  YSLFSKGPAATLRRSSGVKARPKCWSNRRRGRLEPKSSKKY 58
            Y   S G  A     +  +ARP CWS R    +E  S+  +
Sbjct: 1041 YEYISNGTLAEHLHGNRAEARPLCWSTRLNIAIETASALSF 1081


>At4g22590.1 68417.m03259 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPA) GI:2944178; contains Pfam profile PF02358:
           Trehalose-phosphatase
          Length = 377

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 80  SRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKVDKD 250
           S  PR+ L + F + + P+D  S  A  L        + H+AA A++   ++ +D D
Sbjct: 59  SSPPRKRLVKDFNIEIAPEDDFSQRAWMLKYPSAITSFAHIAAQAKNKKIAVFLDYD 115


>At3g55100.1 68416.m06119 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 662

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 53  LPYFFDDFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRH 199
           LP FF +FGS  P +     F L L   DL     G     E+ R W+H
Sbjct: 263 LPLFFSEFGSPIPEKENIAEFTLDLI-KDLEGSPEGTRGLVEFNRNWQH 310


>At3g23740.1 68416.m02985 expressed protein 
          Length = 542

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 235 DAGTNISSRCSEMAPRSVVFPVQQ 164
           D GT+ SSRCS+   +++  PV Q
Sbjct: 156 DDGTSSSSRCSKSLSQNITKPVSQ 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,584,410
Number of Sequences: 28952
Number of extensions: 149055
Number of successful extensions: 327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)