Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 56 1e-08
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 56 2e-08
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 56 2e-08
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 54 4e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 54 4e-08
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 54 4e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 52 2e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 52 3e-07
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 51 5e-07
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 50 1e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 3e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 48 3e-06
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 48 3e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 47 9e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila... 46 2e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila... 46 2e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 3e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 4e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 4e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 44 8e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 44 8e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 44 8e-05
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 44 8e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 43 1e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 43 1e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 3e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 3e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 41 4e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.001
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.002
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 39 0.002
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.003
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 38 0.003
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 38 0.003
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.005
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.007
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ... 37 0.009
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.012
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 36 0.012
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 36 0.012
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 36 0.012
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 36 0.012
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 36 0.017
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 36 0.017
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.017
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.017
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 36 0.022
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 36 0.022
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.022
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.022
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 35 0.029
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 35 0.029
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 35 0.029
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 35 0.038
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 35 0.038
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.038
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 34 0.067
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 34 0.067
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.067
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.088
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.088
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.088
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 33 0.12
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.12
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.12
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 33 0.12
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.15
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.15
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 33 0.15
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 33 0.15
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.15
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 32 0.20
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 32 0.20
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.20
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.20
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.20
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 32 0.27
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 32 0.27
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 31 0.47
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.47
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 31 0.62
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.62
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.62
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 0.82
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 30 1.1
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.1
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.1
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 29 1.4
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 1.4
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 1.4
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 1.9
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 29 1.9
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 1.9
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 1.9
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 29 1.9
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 29 1.9
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 29 1.9
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 29 1.9
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 1.9
At4g10610.1 68417.m01735 RNA-binding protein, putative 29 2.5
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 2.5
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 28 3.3
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 3.3
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 3.3
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 3.3
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 28 3.3
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 4.4
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 4.4
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 4.4
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 28 4.4
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 28 4.4
At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related conta... 27 5.8
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 5.8
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 27 5.8
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 5.8
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 5.8
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 5.8
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 5.8
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 5.8
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 27 7.7
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 7.7
At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing ... 27 7.7
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE------------SN 144
V +E +DA +A + NG K V A E + + E SN
Sbjct: 74 VNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN 133
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
LY+ NL P ++ E+L +FSPFG +T+S+V S+G GFV + T ++A +A+ ++
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 193
Query: 304 GQ 309
G+
Sbjct: 194 GK 195
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +1
Query: 55 LLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
+L+ K + V L E + +N+Y+ NL T + L F +G IT++ V
Sbjct: 1 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60
Query: 235 -------SQGIGFVCYETRQQAEDAIKHMNG 306
S+G GFV +E A A++ +NG
Sbjct: 61 MKDGEGKSKGFGFVNFENADDAARAVESLNG 91
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 55.6 bits (128), Expect = 2e-08
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
+EY EDA+ A N + + GK ++V+ A ++K S D +NL+I NL PD+
Sbjct: 71 IEYRSEEDADYAIKVLNMIKLHGKPIRVNKA---SQDKKSL--DVGANLFIGNLDPDVDE 125
Query: 181 ERLNTLFSPFGNI-TNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
+ L FS FG I +N ++ S+G GF+ Y++ + ++ AI+ M GQ
Sbjct: 126 KLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQ 177
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 118 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQ 273
S + + ++ +Y+ L ++ E L LF G + N + + Q GF+ Y + +
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 274 QAEDAIKHMN 303
A+ AIK +N
Sbjct: 78 DADYAIKVLN 87
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 55.6 bits (128), Expect = 2e-08
Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE------------SN 144
V +E +DA +A A NG K V A E + K E SN
Sbjct: 269 VNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN 328
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMN 303
LY+ NL +T ++L F+PFG IT+ S VS+G GFV + T ++A AI MN
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 304 GQ 309
G+
Sbjct: 389 GK 390
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V Y +DA +A N + + G+ ++V +++ +P S + N++I NL +
Sbjct: 91 VNYATPQDASRALNELNFMALNGRAIRVMYSVRDP----SLRKSGVGNIFIKNLDKSIDH 146
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L+ FS FG I + +V S+G GFV Y+T + A+ AI +NG
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Score = 49.6 bits (113), Expect = 1e-06
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V+Y+ E A+ A NG+L+ K + V + + S + +N+Y+ NL ++
Sbjct: 178 VQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSD 237
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
E LN +F FG T+ + S+G GFV +E A A+ +NG+
Sbjct: 238 EELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 54.4 bits (125), Expect = 4e-08
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA--------LLNPENKVSHKPDTE----SN 144
V ++ EDA +A NG K L V A LL + K H+ SN
Sbjct: 246 VNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN 305
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
+Y+ N+ +T E L FS G IT++++ S+G GFVC+ T ++A DA+K +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 304 GQ 309
GQ
Sbjct: 366 GQ 367
Score = 47.6 bits (108), Expect = 5e-06
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTL 198
+DA A N L+ GK ++V +++ P+ + + N+++ NLP +T L +
Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR----RNGVGNVFVKNLPESVTNAVLQDM 131
Query: 199 FSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
F FGNI + +V S+G GFV +E A AI+ +N
Sbjct: 132 FKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Score = 40.7 bits (91), Expect = 6e-04
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE-SNLYISNLPPDMT 177
V++E+ + A A N ++ K + V + ++V KP+ + +NLY+ NL D++
Sbjct: 157 VQFEQEDAAHAAIQTLNSTIVADKEIYVG-KFMKKTDRV--KPEEKYTNLYMKNLDADVS 213
Query: 178 LERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMNG 306
+ L F+ FG I + +R+ +G FV ++ + A A + +NG
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 54.4 bits (125), Expect = 4e-08
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +1
Query: 67 GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV---- 234
G+ LKV+FA NK P+TE L++ NL +T E L F G++ +RV
Sbjct: 153 GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDG 212
Query: 235 ----SQGIGFVCYETRQQAEDAIKHMNG 306
S+G GFVCY ++ + E A++ ++G
Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDG 240
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 54.4 bits (125), Expect = 4e-08
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE--SNLYISNLPPDM 174
V++EK E A+ A NG+LM K + V + E T +N+Y+ NLP ++
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240
Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L F FG I+++ V S+ GFV +E + A A++ MNG
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNG 291
Score = 50.4 bits (115), Expect = 7e-07
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
+NLY+ NL + E+L +FS +GN+T+S+V S+G GFV Y ++A A+
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391
Query: 298 MNGQ 309
MNG+
Sbjct: 392 MNGK 395
Score = 45.6 bits (103), Expect = 2e-05
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
+ + DA +A A N + + +++ + +P ++S K N++I NL +
Sbjct: 94 INFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGK----GNIFIKNLDASIDN 149
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L FS FG I + +V S+G GFV +E + A+ AI +NG
Sbjct: 150 KALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V Y +DAEKA N + GK ++++++ S + NL++ NL +
Sbjct: 92 VNYSNTDDAEKAMQKLNYSYLNGKMIRITYS----SRDSSARRSGVGNLFVKNLDKSVDN 147
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
+ L+ FS G I + +V S+G GFV ++T A++AI+ +NG+
Sbjct: 148 KTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197
Score = 49.2 bits (112), Expect = 2e-06
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV--SHKPDTES----------N 144
V +E EDA +A A NG K V A E ++ S + + S N
Sbjct: 270 VNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLN 329
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
LY+ NL +T E+L LF+ FG IT+ +V S+G GFV + +A + MN
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 304 GQ 309
G+
Sbjct: 390 GK 391
Score = 45.6 bits (103), Expect = 2e-05
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V+++ + A+ A NG ++ K + V L E + + +N+Y+ NL T
Sbjct: 179 VQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTD 238
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
+ L T F +G+I+++ V S+ GFV +E + A A++ +NG+
Sbjct: 239 DELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 51.6 bits (118), Expect = 3e-07
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
V++EK E A+ A NG+L+ K + V + + S S N+Y+ NLP ++
Sbjct: 177 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 236
Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
T + L F +G+I+++ V S+ GFV + + + A A++ MNG
Sbjct: 237 TDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNG 287
Score = 50.8 bits (116), Expect = 5e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
SNLY+ NL + E+L +FS +GN+T+ +V S+G GFV Y ++A A+K
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387
Query: 298 MNGQ 309
MNG+
Sbjct: 388 MNGK 391
Score = 48.0 bits (109), Expect = 4e-06
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V + EDA +A + N ++ + +++ + +P ++S K N++I NL +
Sbjct: 90 VNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGK----GNVFIKNLDASIDN 145
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L FS FG I + +V S+G GFV +E + A+ AI +NG
Sbjct: 146 KALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 50.8 bits (116), Expect = 5e-07
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPEN------KVSH----KPDTE-SNL 147
V + E+A+KA + GL + K L V AL E K S KP+ SNL
Sbjct: 247 VNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNL 306
Query: 148 YISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
Y+ NL M RL +F +G I +++V S+G GFVC+ ++++ A +++NG
Sbjct: 307 YVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG 366
Score = 50.0 bits (114), Expect = 9e-07
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V+++ + A AR+A +G ++ GK L V+ + E +N+Y+ NL +T
Sbjct: 156 VQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTD 215
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L+TLFS +G +++ V S+G GFV + + A+ A++ + G
Sbjct: 216 DCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCG 264
Score = 46.4 bits (105), Expect = 1e-05
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---NLYISNLPPD 171
+ ++ A A N ++GK +++ ++ + ++++ T + NLY+ NL
Sbjct: 67 INFDSPFSASNAMTRLNHSDLKGKAMRIMWS----QRDLAYRRRTRTGFANLYVKNLDSS 122
Query: 172 MTLERLNTLFSPFGNITNSRV------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA 333
+T L +F PFG+I + +V S+G GFV ++T Q A A ++G + G
Sbjct: 123 ITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSM-VYGKKL 181
Query: 334 VIVKF 348
+ KF
Sbjct: 182 FVAKF 186
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 49.6 bits (113), Expect = 1e-06
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
V Y A A + NG + G+ +KV++A + + DT S N+++ +L P++
Sbjct: 101 VHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 155
Query: 175 TLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
T L FS F + +++RV S+G GFV + +Q A+ AI MNG+
Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 208
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----SQGIGFVCYETRQQAEDAIK 294
P T ++Y+ N+ +T L +F+ G + +S++ GFV Y R+ A AI
Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAIL 114
Query: 295 HMNGQ 309
+NG+
Sbjct: 115 SLNGR 119
Score = 31.9 bits (69), Expect = 0.27
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYETRQQAEDAIKHMNG 306
+ +Y+ NL P++T L+ F G I RV + G GFV Y T +A AI+ N
Sbjct: 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNT 324
Query: 307 Q 309
Q
Sbjct: 325 Q 325
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 48.4 bits (110), Expect = 3e-06
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESNLYISNLPPDMTLERL 189
E+AEKA FN + G+ L V+ A PE + D +Y+ NLP D+ RL
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ-PRVYDAAFRIYVGNLPWDVDSGRL 223
Query: 190 NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
LFS G + ++RV S+G GFV + AI ++GQ
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 48.4 bits (110), Expect = 3e-06
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
V Y A A NG + G+ +KV++A + + DT S N+++ +L P++
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 159
Query: 175 TLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
T L FS F + +++RV S+G GFV + +Q A+ AI MNG+
Sbjct: 160 TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 212
Score = 35.1 bits (77), Expect = 0.029
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYE 264
L+ E+ + P + +Y+ NL P++T L+ LF G I RV + G GFV Y
Sbjct: 256 LSNEDAPENNPQF-TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 314
Query: 265 TRQQAEDAIKHMNGQ 309
T +A AI+ N Q
Sbjct: 315 THDEAALAIQMGNAQ 329
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL--LNPENKVSHKPDTES----------- 141
V +EK E A A NG+++ K L V A N + K + E
Sbjct: 164 VNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGM 223
Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHM 300
NLY+ NL + +L LFS FG IT+ +V S+G+GFV + T ++A A+ M
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 301 NGQ 309
NG+
Sbjct: 284 NGK 286
Score = 37.9 bits (84), Expect = 0.004
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = +1
Query: 61 MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN----- 225
++GK +++ F+ +P N++S + N+++ NL + ++L +FS FG + +
Sbjct: 9 LKGKPMRIMFSERDPSNRMSGR----GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVAR 64
Query: 226 --SRVSQGIGFVCYETRQQAEDAIKHMNG 306
S VS+G GFV + + A NG
Sbjct: 65 DASGVSKGYGFVQFYSDLSVYTACNFHNG 93
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
+N+Y+ NL T L LF FG IT++ V S+ GFV +E + A AI+
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 298 MNG 306
MNG
Sbjct: 179 MNG 181
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV 117
VE+ E+A KA NG ++ K + VS A ++K+
Sbjct: 268 VEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKL 306
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDAIKHMNG 306
T + +++ + PD+ E L FS FG + + + V +G GFV + R+ AEDAI+ +NG
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG 378
Score = 32.3 bits (70), Expect = 0.20
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
VE+ AE+ ++G +M + ++++A + K + + + ++++ +L PD+
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 175 TLERLNTLFSP-FGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
T L+ FS + ++ +++V S+G GFV + + A+ MNG
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 266
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 115 VSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDA 288
+S S +++ L D+T E L FS FG + + + V +G GFV + RQ AE+A
Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEA 378
Query: 289 IKHMNG 306
I ++NG
Sbjct: 379 IGNLNG 384
Score = 33.5 bits (73), Expect = 0.088
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
VE+ AE+A +F+G+ M + ++++A + K + + + ++++ +L PD+
Sbjct: 165 VEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDV 224
Query: 175 T-LERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L T + ++ ++V S+G GFV + + A+ MNG
Sbjct: 225 SDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNG 277
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
D L++ +L M L+T FS +++ +V S+G GFV + +R AE+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 286 AIKHMNG 306
A++ +G
Sbjct: 176 ALQSFSG 182
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.6 bits (103), Expect = 2e-05
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267
K K E+NLYI LPP + + L LFS FG I ++V S+G GFV Y
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 268 RQQAEDAIKHMNG 306
Q A A++ MNG
Sbjct: 531 VQMANTAVQAMNG 543
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.6 bits (103), Expect = 2e-05
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267
K K E+NLYI LPP + + L LFS FG I ++V S+G GFV Y
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 268 RQQAEDAIKHMNG 306
Q A A++ MNG
Sbjct: 531 VQMANTAVQAMNG 543
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALL-------NPENKVSHKP-DTESNLYISNLPPDM 174
E+A+ A F+ + G+ + VSFA +P + S P DT LY+SNL
Sbjct: 146 EEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205
Query: 175 TLERLNTLFSPFG-NITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
L LF+ N ++RV S G GFV + TR++AE+AI +NG+
Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGK 259
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAI 291
ES +++ L D+T +L + F +G IT ++ +G GF+ + R+ A+DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 292 KHMNGQ 309
KHM+G+
Sbjct: 71 KHMHGR 76
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAI 291
ES +++ L D+T +L + F +G IT ++ +G GF+ + R+ A+DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 292 KHMNGQ 309
KHM+G+
Sbjct: 71 KHMHGR 76
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 43.6 bits (98), Expect = 8e-05
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Frame = +1
Query: 70 KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----- 234
KTL + +LL + E L++ LP +++ + +LFS +G I + ++
Sbjct: 83 KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ 142
Query: 235 --SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIV 342
S+G F+ YET++QA A++ +NG+ + G+ +V
Sbjct: 143 QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180
Score = 36.3 bits (80), Expect = 0.012
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Frame = +1
Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG-----NITN---SRVSQGIGFVCY 261
EN+ ++ + L++ +P M+ +L TLF F NI +R S+G F+
Sbjct: 7 ENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66
Query: 262 ETRQQAEDAIKHMNGQCPIPGAGAVI-VKF 348
+R++A+ + + + +PGA +++ VK+
Sbjct: 67 PSREEADKLVNACHNKKTLPGANSLLQVKY 96
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.6 bits (98), Expect = 8e-05
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Frame = +1
Query: 70 KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----- 234
KTL + +LL + E L++ LP +++ + +LFS +G I + ++
Sbjct: 83 KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ 142
Query: 235 --SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIV 342
S+G F+ YET++QA A++ +NG+ + G+ +V
Sbjct: 143 QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+NL+I N+P + + L F FG + +++V S+ GFV Y+++ A++AI
Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 295 HMNGQ 309
MNG+
Sbjct: 409 MMNGR 413
Score = 36.3 bits (80), Expect = 0.012
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Frame = +1
Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG-----NITN---SRVSQGIGFVCY 261
EN+ ++ + L++ +P M+ +L TLF F NI +R S+G F+
Sbjct: 7 ENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66
Query: 262 ETRQQAEDAIKHMNGQCPIPGAGAVI-VKF 348
+R++A+ + + + +PGA +++ VK+
Sbjct: 67 PSREEADKLVNACHNKKTLPGANSLLQVKY 96
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+NL+I N+P + + L F PFG + +++V S+ GF+ Y+++ A++AI
Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 295 HMNGQCPIPG 324
MNG C + G
Sbjct: 399 TMNG-CQLSG 407
Score = 39.5 bits (88), Expect = 0.001
Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 13/123 (10%)
Frame = +1
Query: 19 EDAEKARAAF-NGLLMQGKT--LKVSFA--LLNPENKVSHKPDTESNLYISNLPPDMTLE 183
EDA+K +F N + G + L+V +A L + + + E L++ LP +++
Sbjct: 64 EDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSET 123
Query: 184 RLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-VI 339
+ +LFS +G I + ++ S+G F+ YE+++QA A++ +NG+ + GA +I
Sbjct: 124 EVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLI 183
Query: 340 VKF 348
VK+
Sbjct: 184 VKW 186
Score = 30.7 bits (66), Expect = 0.62
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKHM 300
L++ +P MT +L TLF F + +R +G F+ TR+ A+ I
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 301 NGQCPIPGAGAVI-VKF 348
+ + +PGA + + VK+
Sbjct: 74 HNKKTLPGASSPLQVKY 90
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+NL+I N+P + + L F PFG + +++V S+ GF+ Y+++ A++AI
Sbjct: 330 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
Query: 295 HMNGQCPIPG 324
MNG C + G
Sbjct: 390 TMNG-CQLSG 398
Score = 40.7 bits (91), Expect = 6e-04
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTL 198
EDA+K +F+ KTL + + L + E L++ LP +++ + +L
Sbjct: 64 EDADKVINSFHNK----KTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSL 119
Query: 199 FSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-VIVKF 348
FS +G I + ++ S+G F+ YE+++QA A++ +NG+ + GA +IVK+
Sbjct: 120 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKW 177
Score = 30.7 bits (66), Expect = 0.62
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKHM 300
L++ +P MT +L TLF F + +R +G F+ TR+ A+ I
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 301 NGQCPIPGAGAVI-VKF 348
+ + +PGA + + VK+
Sbjct: 74 HNKKTLPGASSPLQVKY 90
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Frame = +1
Query: 88 FALLNP--ENKVSHKPDTE--SNLYISNLPPDMTLERLNTLFSPFGNITNSRV------- 234
F+ L+P E++ +P E +NL++S L T E L T F+ FG + +++V
Sbjct: 35 FSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
Query: 235 -SQGIGFVCYETRQQAEDAIKHMNGQ 309
S+G GFV Y T + + I M+G+
Sbjct: 95 YSKGFGFVRYATLEDSAKGIAGMDGK 120
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGN-----ITNSRVSQG--IGFVCYETRQQAEDA 288
D +++Y+ LP D+T E + +FS +G+ I N R +G GFV + R+ A+DA
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDA 63
Query: 289 IKHMNGQ 309
I+ M+G+
Sbjct: 64 IEDMDGK 70
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +1
Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYET 267
+ S P + S+L++ ++ RL +FS FG +TN +R S G G+V + +
Sbjct: 49 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108
Query: 268 RQQAEDAIKHMNGQ 309
++ A+ A++ MNG+
Sbjct: 109 KEDAQSAVEAMNGK 122
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +1
Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYET 267
+ S P + S+L++ ++ RL +FS FG +TN +R S G G+V + +
Sbjct: 68 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127
Query: 268 RQQAEDAIKHMNGQ 309
++ A+ A++ MNG+
Sbjct: 128 KEDAQSAVEAMNGK 141
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +1
Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQGIGFVCYETRQQAEDAI 291
P+ LY+ NLP ++T E + +F +G I R+ ++G FV YE A++A+
Sbjct: 15 PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAV 74
Query: 292 KHMNG 306
H++G
Sbjct: 75 DHLSG 79
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.7 bits (96), Expect = 1e-04
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV---SHKPDTESNLYISNLPPD 171
VE++ E A G ++ G L + F +KV S+K + L++ N+ +
Sbjct: 620 VEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFE 679
Query: 172 MTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294
T L LFSPFG I + R+ + G FV + T+Q+A +A K
Sbjct: 680 ATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKK 727
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIKHM 300
L++ NLP T E L FS FG I+ ++ S+GI ++ Y + A A++ +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 301 N 303
+
Sbjct: 323 D 323
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Frame = +1
Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDA 288
++S LY+SNL +T ++TLFS FG + ++R S+G+ FV Y +R+ A A
Sbjct: 55 SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114
Query: 289 IKHMNGQ 309
+ M+ +
Sbjct: 115 ARSMDAK 121
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+ +Y+ NL P T + L FS +GN+ ++ V S+G GFV Y + +AE A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 295 HMNGQ 309
M+G+
Sbjct: 63 GMDGK 67
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESNLYISNLPPDMTLERL 189
++AE A FN + G+ L V+ A PE + + +Y+ NLP D+ RL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 190 NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
LFS G + +RV S+G GFV + +AI ++GQ
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 41.9 bits (94), Expect = 3e-04
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Frame = +1
Query: 1 VEYEKHEDAEKA-RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
V+Y +DA++A RA N + + G T V + E + E L++ +L T
Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERE--RIGTLEFKLFVGSLNKQAT 223
Query: 178 LERLNTLFSPFGNITNS-------RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-A 333
+ + +F FG++ + R S+G GFV Y +++ A AI +NG + G
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283
Query: 334 VIVKF 348
+IV+F
Sbjct: 284 LIVRF 288
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 41.9 bits (94), Expect = 3e-04
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Frame = +1
Query: 1 VEYEKHEDAEKA-RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
V+Y +DA++A RA N + + G T V + E + E L++ +L T
Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERE--RIGTLEFKLFVGSLNKQAT 223
Query: 178 LERLNTLFSPFGNITNS-------RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-A 333
+ + +F FG++ + R S+G GFV Y +++ A AI +NG + G
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283
Query: 334 VIVKF 348
+IV+F
Sbjct: 284 LIVRF 288
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 3e-04
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
V Y A A NG + G+ +KV++A + + DT S N+++ +L P++
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 159
Query: 175 TLERLNTLFSPFGNITN----SRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
T L FS F + ++ +RV S+G GFV + +Q A+ AI MNG+
Sbjct: 160 TDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 216
Score = 35.1 bits (77), Expect = 0.029
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYE 264
L+ E+ + P + +Y+ NL P++T L+ LF G I RV + G GFV Y
Sbjct: 260 LSNEDAPENNPQF-TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 318
Query: 265 TRQQAEDAIKHMNGQ 309
T +A AI+ N Q
Sbjct: 319 THDEAALAIQMGNAQ 333
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 41.1 bits (92), Expect = 4e-04
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGK--TLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
+E+ H AE+ +NG M G T ++++A KV PD ++++ +L PD+
Sbjct: 70 IEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPD--HSIFVGDLAPDV 127
Query: 175 TLERLNTLFSP-FGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
T L F + ++ ++V S+G GFV + + A+ MNG
Sbjct: 128 TDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 40.7 bits (91), Expect = 6e-04
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHK----PDTESNLYISNLPP 168
+E E+A A + +G+ LKV +A + + + P NL+++NL
Sbjct: 139 IEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAF 198
Query: 169 DMTLERLNTLF-SPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+ + L F + GN+ N R S G GFV ++T++QAE A+ G+
Sbjct: 199 EARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGK 254
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
VE+E H+ A+K FNG M + ++++A + K + ++++ +L PD+
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208
Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L+ FS + ++ ++V S+G GFV + + A+ MNG
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306
N+ +S+G GFV +E+ A+ ++ NG
Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
VE+E H+ A+K FNG M + ++++A + K + ++++ +L PD+
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208
Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L+ FS + ++ ++V S+G GFV + + A+ MNG
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 49 NGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNS 228
NG QG + + L PE + + + +++ L +T E L F+ FG I +
Sbjct: 280 NGYQQQGGYMP-NGTLTRPEGDIMN-----TTIFVGGLDSSVTDEDLKQPFNEFGEIVSV 333
Query: 229 R--VSQGIGFVCYETRQQAEDAIKHMNG 306
+ V +G GFV + R AE+A++ +NG
Sbjct: 334 KIPVGKGCGFVQFVNRPNAEEALEKLNG 361
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306
N+ +S+G GFV +E+ A+ ++ NG
Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNG 166
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
+E+ H AE+ +NG M +T ++++A K + +++ +L P++
Sbjct: 106 IEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEV 165
Query: 175 TLERLNTLF-SPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
T L+ F + +G++ ++V S+G GFV + + A+ MNGQ
Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQQAEDAIKHMNG 306
+ +++ L ++T + L ++F FG + + ++ G GFV Y + AE A+ +NG
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNG 317
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
E+++ ++NL D L LF PFG +T V S+G GFV + +R+ A+ AI
Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
Query: 292 KHMNG 306
+NG
Sbjct: 233 NKLNG 237
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDAIKHMNG 306
+ +++ L +T E L FS FG I + + V +G GFV + R AE+A++ +NG
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
VE+E H+ A+K FNG M + ++++A + K + ++++ +L PD+
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDV 210
Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
+ L+ FS + ++ ++V S+G GFV + + A+ MNG
Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291
E+++ ++NL D L LF PFG +T + VS+G GFV + +R+ A+ AI
Sbjct: 212 ENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
Query: 292 KHMNG 306
+NG
Sbjct: 272 NKLNG 276
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIK 294
++Y+ N D L LFS FG + + G FV +E + AEDAI+
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+ LYI L P L FS F +T +RV S+G GFV + + A AI
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 295 HMNGQ 309
MNGQ
Sbjct: 91 AMNGQ 95
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIK 294
L++ N P T E + F P+G +TN R+ + FV +ET++ A A++
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALE 145
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+ L++S L T + L LFSPFG I +R+ +G GF+ +++ A A+K
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 295 HMNGQ 309
++G+
Sbjct: 67 SLDGK 71
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.9 bits (84), Expect = 0.004
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALL--NPENKVSHKPDTESN---------LYISNLP 165
E+A++A FN + G+T+KV+F + EN+V ++N +Y NL
Sbjct: 168 EEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLG 227
Query: 166 PDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
++T + L F + ++V S+G GF+ +E+ + + A+ MNG
Sbjct: 228 WNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +1
Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCY 261
E + + E LY+ NLP +T L+ +F G + + ++ S+G GFV
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Query: 262 ETRQQAEDAIKHMN 303
+ ++A++A++ N
Sbjct: 165 GSIEEAKEAMQMFN 178
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+ +Y+ NL + L +LFS G + +RV S+G GFV Y++ Q+ ++AIK
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 295 HMNG 306
++G
Sbjct: 264 SLDG 267
Score = 31.5 bits (68), Expect = 0.36
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +1
Query: 88 FALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQG 243
FA + P + S D + L++ NLP ++ +L LF GN+ V S+G
Sbjct: 76 FADVAPPKEQSFSADLK--LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133
Query: 244 IGFVCYETRQQAEDAIKHMNG 306
GFV + + E A + NG
Sbjct: 134 FGFVTMSSVSEVEAAAQQFNG 154
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
S +++ L P++T L FS FG+I + ++ S+G GF+ + R+ +++I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 295 HMNGQ 309
M+G+
Sbjct: 67 EMHGR 71
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +1
Query: 100 NPENKVSHK-PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFV 255
N +N S P ++LYI+NL ++ E L +FS FG + S + S+G F+
Sbjct: 3 NDDNHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFI 62
Query: 256 CYETRQQAEDAIKHMNGQ 309
+E+ A A+ HM+G+
Sbjct: 63 EFESADSAGRAMLHMDGR 80
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQ 273
N + T + +++ + +T + L ++F FG + + ++ G GFV Y R
Sbjct: 265 NTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRA 324
Query: 274 QAEDAIKHMNG 306
AE A+ +NG
Sbjct: 325 CAEQALSVLNG 335
Score = 36.3 bits (80), Expect = 0.012
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNP-ENKVSHKPDTESNLYISNLPPD 171
+E+ H AE+ +NG M + ++++A L E + + P E +++ +L PD
Sbjct: 126 IEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGP--EHTVFVGDLAPD 183
Query: 172 MTLERLNTLFSPF------GNITNSRV---SQGIGFVCYETRQQAEDAIKHMNGQ 309
+T L F + N R S+G GFV + + A+ MNGQ
Sbjct: 184 VTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
contains Pfam profile:PF00046 Homeobox domain and Pfam
profile:PF00076 RNA recognition motif
Length = 444
Score = 36.7 bits (81), Expect = 0.009
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 124 KPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDAI 291
KP L + LP + ++ L + F +G+I+ R+ + GIG V Y T + AE AI
Sbjct: 281 KPPPPPALVVMGLPANCSVLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAI 337
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 154 SNLPPDMTLERLNTLFSPFGNITNSRVSQ---GIGFVCYETRQQAEDAIKHMNGQ 309
S L T + L LF+PF + + +Q G GF+ +E+ A+ A+K +NG+
Sbjct: 76 SGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
+ +E +DA+KA A NG ++ G+ + V A
Sbjct: 112 ITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 43 AFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---NLYISNLPPDMTLERLNTLFSPFG 213
+F G ++ G L +SF+ P V D ++ L++ N+ + T++ + LF+PFG
Sbjct: 316 SFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKEVRQLFTPFG 375
Query: 214 NI 219
I
Sbjct: 376 QI 377
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
L++ N D T R L F P+G I N R+ + F+ YE ++ A A+ N
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 111
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVS-HKPD 132
++YE EDA +A A N + K + V +A+ + + + + H P+
Sbjct: 95 IQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 139
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
L++ N D T R L F P+G I N R+ + F+ YE ++ A A+ N
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVS-HKPD 132
++YE EDA +A A N + K + V +A+ + + + + H P+
Sbjct: 136 IQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQQAEDAIKHMNG 306
+ +++ L +T + L +FS +G I + ++ G GFV + + AE+A++ +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNG 318
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252
+ +YISNLPPD+T + L LF G + R+ Q G+
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQV--GRIKQKRGY 315
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252
+ +YISNLPPD+T + L LF G + R+ Q G+
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQV--GRIKQKRGY 315
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
D E ++ L L T F+ +G++ +S++ S+G GFV ++ + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 286 AIKHMNGQ 309
AI+ MNGQ
Sbjct: 65 AIEGMNGQ 72
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
D E ++ L L T F+ +G++ +S++ S+G GFV ++ + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 286 AIKHMNGQ 309
AI+ MNGQ
Sbjct: 65 AIEGMNGQ 72
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 35.5 bits (78), Expect = 0.022
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 61 MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234
MQ + +L +PE D + L +SNL P +T E+L LFS G + + +
Sbjct: 327 MQAQAQSNKGSLGSPEK--GENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITD 384
Query: 235 SQGIGFVCYETRQQAEDAI 291
S+ I ++ Y ++A A+
Sbjct: 385 SKHIAYIEYSNSEEATAAL 403
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQGIGFVCYETRQQAEDAI 291
P+ LYI NLP +T E LF + I R+ ++G FV YE A+ A+
Sbjct: 16 PEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAV 75
Query: 292 KHM 300
H+
Sbjct: 76 DHL 78
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKP 129
VE++ DAEKA+ +G + GK +K +F L P KVS P
Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVKATFT-LPPRQKVSSPP 185
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKP 129
VE++ DAEKA+ +G + GK +K +F L P KVS P
Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVKATFT-LPPRQKVSSPP 185
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
+ E ++ L E L FS FG++ +S++ S+G GFV ++ + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 286 AIKHMNGQ 309
AI+ MNG+
Sbjct: 63 AIEEMNGK 70
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
+ E ++ L E L FS FG++ +S++ S+G GFV ++ + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 286 AIKHMNGQ 309
AI+ MNG+
Sbjct: 63 AIEEMNGK 70
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
+ E ++ L E L FS FG++ +S++ S+G GFV ++ + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 286 AIKHMNGQ 309
AI+ MNG+
Sbjct: 63 AIEEMNGK 70
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 34.7 bits (76), Expect = 0.038
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +1
Query: 115 VSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETR 270
+SH D E+ +Y++ LP E L + F FG I ++V S+G GFV +
Sbjct: 1 MSHPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60
Query: 271 QQAEDAIKHMN 303
+ A A ++ N
Sbjct: 61 ESATRACENPN 71
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 34.7 bits (76), Expect = 0.038
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
+ E ++ L E L FS FG++ +S++ S+G GFV ++ + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 286 AIKHMNG 306
AI+ MNG
Sbjct: 63 AIEEMNG 69
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.7 bits (76), Expect = 0.038
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNG-LLMQGKTLKVSFALLNPEN-KVSHKP---DTESNLYISNLP 165
++Y+K E+ A AA G+ L V E ++ P LY+ L
Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLN 215
Query: 166 PDMTLERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMNGQCPIPG 324
T +N +FS +G I + ++ +G FV + ++ A AIK +NG I G
Sbjct: 216 KQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRG 275
Query: 325 AG-AVIVKF 348
+ +IV+F
Sbjct: 276 SDQPLIVRF 284
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 33.9 bits (74), Expect = 0.067
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
L++ N T R L F P+G I N R+ + F+ YE ++ A A+ N
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 114
++YE EDA +A A N + K + V +A+ + +++
Sbjct: 135 IQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSR 172
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 33.9 bits (74), Expect = 0.067
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
L++ N T R L F P+G I N R+ + F+ YE ++ A A+ N
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 114
++YE EDA +A A N + K + V +A+ + +++
Sbjct: 135 IQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSR 172
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 33.9 bits (74), Expect = 0.067
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Frame = +1
Query: 1 VEYEKHEDAE--KARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
+EY H AE K + + + VS+A LYI NLP D+
Sbjct: 220 IEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDI 279
Query: 175 TLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKH 297
T ERL LF G I + GFV Y R A+K+
Sbjct: 280 TQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 328
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.5 bits (73), Expect = 0.088
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294
E L+++NLP + + + F G + ++ G GFV + + +AE+A++
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQ 185
Query: 295 HMNGQC 312
NG+C
Sbjct: 186 KKNGEC 191
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294
E L+++NL P + + F+ G + + R+ G GFV + + + + A++
Sbjct: 243 EEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALE 302
Query: 295 HMNGQ 309
+ NG+
Sbjct: 303 NKNGE 307
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 294
+ L+++NL P + + F + R+ G GFV + + +A+ A++
Sbjct: 488 KKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQ 547
Query: 295 HMNGQ 309
MNG+
Sbjct: 548 KMNGE 552
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.5 bits (73), Expect = 0.088
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Frame = +1
Query: 7 YEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186
Y AE A+ A G G + + + P+ ++ + ++++ +P ++
Sbjct: 48 YVTFASAEDAKNALKGEHFLGNRI-LEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESD 106
Query: 187 LNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIK 294
+ F +G IT NS+ +GIGF+ + + ED ++
Sbjct: 107 FRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 33.5 bits (73), Expect = 0.088
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
++ LY+S L T + L F FGN+ + + +G F+ YET ++A AI
Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
Query: 292 KHMNGQ 309
+ M+G+
Sbjct: 136 QGMHGK 141
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKH 297
LYI NLP D+T ERL LF G I + GFV Y R A+K+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 94
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Frame = +1
Query: 22 DAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDMTLERLNT 195
D + + + ++G V++A +P++ H LY+ N+P + + E+L
Sbjct: 253 DYSRQKMIDSNFKLEGNAPTVTWA--DPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKE 310
Query: 196 LFSPFGNITNSRVSQG------IGFVCYETRQQAEDAIK 294
LF G +T G GFV Y R A A+K
Sbjct: 311 LFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVK 349
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--SQGIGFVCYETRQQAEDAIKHMNG 306
+NL++ +L P+ T L LF +G+I V S+G F+ Y ++A A + + G
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Frame = +1
Query: 118 SHKPDTE-SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETR 270
S KP + S+++++NLP D T+E+L F FG I + IGFV +E
Sbjct: 267 SIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENG 326
Query: 271 QQAEDAIK 294
+ ++ +
Sbjct: 327 EAVKNVFQ 334
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+ LY+ NL + L LF+ G + +RV S+G GFV + Q+ + AI
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308
Query: 295 HMNG 306
+NG
Sbjct: 309 SLNG 312
Score = 31.1 bits (67), Expect = 0.47
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258
P + S PD + L++ NL ++ +L LF GN+ V S+G GFV
Sbjct: 89 PVERNSFSPDLK--LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Query: 259 YETRQQAEDAIKHMNG 306
T + E A + NG
Sbjct: 147 MSTAAEVEAAAQQFNG 162
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
+ LY+ NL + L LF+ G + +RV S+G GFV + Q+ + AI
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 295 HMNG 306
+NG
Sbjct: 317 SLNG 320
Score = 31.1 bits (67), Expect = 0.47
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258
P + S PD + L++ NL ++ +L LF GN+ V S+G GFV
Sbjct: 89 PVERNSFSPDLK--LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Query: 259 YETRQQAEDAIKHMNG 306
T + E A + NG
Sbjct: 147 MSTAAEVEAAAQQFNG 162
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
S L++ L L F+ FG +T + V S+G GFV + A +AIK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 295 HMNGQ 309
M+G+
Sbjct: 95 EMDGK 99
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
S L++ L L F+ FG +T + V S+G GFV + A +AIK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 295 HMNGQ 309
M+G+
Sbjct: 95 EMDGK 99
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDAIKHMN 303
LY+ NL +M+ + L +F FG++ + + +G GFV + + A +A+ ++N
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLN 345
Query: 304 GQCPIPG 324
GQ I G
Sbjct: 346 GQLEIAG 352
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
+Y+ NLP D+ + LFS +G + + G FV +E + A+DAI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
+Y+ NLP D+ + LFS +G + + G FV +E + A+DAI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
+Y+ NLP D+ + LFS +G + + G FV ++ + AEDAI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
+Y+ NLP D+ + LFS +G + + G FV ++ + AEDAI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
+Y+ NLP D+ + LFS +G + + G FV ++ + AEDAI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 31.9 bits (69), Expect = 0.27
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Frame = +1
Query: 67 GKTLKVSFALLNPENKV--SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234
G+ LK S L+N + + S L+I L T + L+ FS G + +++
Sbjct: 9 GRHLK-SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVM 67
Query: 235 ------SQGIGFVCYETRQQAEDAIKHMNGQ 309
S+G GFV + + +A+ A+ NGQ
Sbjct: 68 DRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
V + ++A+KA FNG + G+T+ V +A
Sbjct: 80 VTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 31.9 bits (69), Expect = 0.27
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
+ E ++ L D + L +FS FGN+ +S++ S+ GFV +E + D
Sbjct: 4 NVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTD 63
Query: 286 AIKHMN 303
AI M+
Sbjct: 64 AIMIMD 69
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVSQGI----GFVCYETRQQAEDAIKH 297
L++ NLP + T E L L PFG + N++ + G F+ +E QA I +
Sbjct: 20 LHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISY 74
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
++Y+ NLP D+ + +F +G I + + FV +E + AEDAIK +G
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDG 67
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQG--IGFVCYETRQQAEDA 288
D ++Y+ NLP D T +L +F FG I + + QG GFV +ET + A
Sbjct: 290 DDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSA 349
Query: 289 IK 294
++
Sbjct: 350 LE 351
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300
+Y+ +P D+T L +FS +G I + + S+G F+ YE ++ A+ ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 301 NG 306
NG
Sbjct: 98 NG 99
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 0.62
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300
LY+ N+P + +L +F PFG + + V S+G G+V + A+ AI +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 301 NG 306
+G
Sbjct: 170 DG 171
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 94 LLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
+LN K +++ +Y+ NLP + L FS FG I ++RV
Sbjct: 197 VLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRV 243
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 30.3 bits (65), Expect = 0.82
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI------TNSRVSQG--IGFVCYETRQQAED 285
D ++Y+ NLP D T +L +F FG I S QG GFV +ET +
Sbjct: 290 DDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQS 349
Query: 286 AIK 294
A++
Sbjct: 350 ALE 352
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG 243
+ S P + S+L++ ++ RL +FS FG +TN G
Sbjct: 49 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNEHYFSG 92
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV------SQGIGFVCYE 264
PE + P + + + NLP + T+ + F FG I V S GFV ++
Sbjct: 1064 PEANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFK 1123
Query: 265 TRQQAEDAIK 294
A+ AIK
Sbjct: 1124 EENAAQRAIK 1133
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI 219
D E L+I NLP D+T E + F+ FG +
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEV 587
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Frame = +1
Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDA 288
T + +Y+ LP E L F FG I + V SQG GFV ++ + A A
Sbjct: 11 TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
Query: 289 IKHMN 303
K N
Sbjct: 71 CKDPN 75
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+ LY+ L L LFS +G + + + + FV + + A+DA +++G+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGR 67
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
D E +I L + L F +G++ ++V S+G GF+ ++ ++ ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 286 AIKHMNG 306
AI MNG
Sbjct: 64 AIAAMNG 70
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 229 RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-AVIVKF 348
R S+G GFV Y +++ A AI +NG + G +IV+F
Sbjct: 6 RQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 46
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +1
Query: 94 LLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIG 249
L +P D L++ L T + L + S +G I N R+ S+G G
Sbjct: 49 LYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYG 108
Query: 250 FVCYETRQQ 276
FV YET ++
Sbjct: 109 FVEYETEKE 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+ LY+ L L LFS +G + + + + FV + + A+DA +++G+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGR 67
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 153 QQFTTRHDPRKTQHSFQSFR*HHE*PR-VTRYRLCLLRDP 269
Q +TT H R T H Q + H PR T L LLR P
Sbjct: 177 QSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLLRTP 216
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 10 EKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
E +D E A LM+ + K + +N +SH+PD E NLY +MT
Sbjct: 482 EAEDDPEVDSVAGGSKLMEERLTKDEWKAIN--KLLSHQPDEEMNLYSGKDMQNMT 535
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 10 EKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
E +D E A LM+ + K + +N +SH+PD E NLY +MT
Sbjct: 482 EAEDDPEVDSVAGGSKLMEERLTKDEWKAIN--KLLSHQPDEEMNLYSGKDMQNMT 535
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYETR 270
PEN + + +Y+ NL P+++ L+ F G I RV + G GFV Y T
Sbjct: 253 PENNAQY-----TTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 307
Query: 271 QQAEDAIKHMNGQCPIPG 324
+A AI+ N + G
Sbjct: 308 VEAALAIQMGNTHSYLSG 325
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291
++ LY+ L ++ L+ F PFG+I + ++ + GFV + R+ A A+
Sbjct: 12 KNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
Query: 292 KHMNG 306
+M+G
Sbjct: 72 DNMDG 76
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
+Y+ NLP D+ + LF +G I + + G FV +E + A+DAI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDG 67
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 97 LNPENKVSHKPDT-ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
+NP ++ + + +Y+S++ +T E+L LF FG + + R+
Sbjct: 135 MNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRI 181
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Frame = +1
Query: 70 KTLKVSFALLNPENK-VSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234
+T + +A+ E K + P +E+ +YI N+P +T E+L L G + +V
Sbjct: 50 RTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109
Query: 235 ------SQGIGFVCYETRQQAEDAIKHMNG 306
S+ GF ++ + A ++ +NG
Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNG 139
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDA 288
+T + LYISNL ++ E + LFS G++ S S+G V + R A A
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAA 164
Query: 289 IKHMN 303
+K N
Sbjct: 165 VKRYN 169
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
++ A ++ + S+ T+ +Y+SN+ ++ ++L FS FG I
Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
++ A ++ + S+ T+ +Y+SN+ ++ ++L FS FG I
Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
++ A ++ + S+ T+ +Y+SN+ ++ ++L FS FG I
Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
+EYEK E+A+ A +A NG + + + V +A
Sbjct: 141 IEYEKKEEAQSAISAMNGAELLTQNVSVDWA 171
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288
+T + LYISNL + E + LF+ G + V S+G V Y R A A
Sbjct: 83 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 142
Query: 289 IKHMN 303
+K N
Sbjct: 143 VKKYN 147
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288
+T + LYISNL + E + LF+ G + V S+G V Y R A A
Sbjct: 19 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 78
Query: 289 IKHMN 303
+K N
Sbjct: 79 VKKYN 83
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288
+T + LYISNL + E + LF+ G + V S+G V Y R A A
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 144
Query: 289 IKHMN 303
+K N
Sbjct: 145 VKKYN 149
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV----SQGI----GFVCYETRQQAEDAIK 294
+++Y+ +LP + ++ L F FG ITN + +G+ GFV +E A AI+
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 504 RSERCTNISTVESCRRRTVEPSSCSVIRDRRSSHA 400
+ E+ T+ ESC + VE S I R S+HA
Sbjct: 488 KDEKKTDTLDTESCVKELVESSMVGAIESRSSTHA 522
>At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 447
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 22 DAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186
D +KA ++++G+ L S L+N ENK D E + +N D+T ++
Sbjct: 228 DLKKAMKDGKPIIIEGRHLDPSIYLMNDENKTPSN-DPEKSSSETNSSKDLTSDK 281
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = +1
Query: 67 GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV---- 234
GK +++ + P +S +++ +P + + F FG + ++
Sbjct: 108 GKQVEIKRTI--PRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDH 165
Query: 235 ----SQGIGFVCYETRQQAEDAIKHM 300
S+G GFV YE +ED + H+
Sbjct: 166 STGRSRGFGFVTYE----SEDMVDHL 187
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300
LYI +P + FS FG + RV S+ GF+ +E + AE A M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 301 N 303
N
Sbjct: 122 N 122
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Frame = +1
Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGF 252
+NPE + L+I + D ERL F +G++ + + ++G GF
Sbjct: 1 MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60
Query: 253 VCYETRQQAEDAI--KHM 300
+ + AE I KH+
Sbjct: 61 IVFADPSVAERVIMDKHI 78
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
+Y++N+P DM +RL F +G++ + S+G Y+T + A+ A+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
+Y++N+P DM +RL F +G++ + S+G Y+T + A+ A+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.5 bits (58), Expect = 5.8
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +1
Query: 7 YEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186
Y+ + A AA NG+ M KTL V A+ + + KP+ E L + + L+R
Sbjct: 423 YQDPSVTDIACAALNGIKMGDKTLTVRRAI---QGAIQPKPEQEEVLLYAQ--QQIALQR 477
Query: 187 LNTLFSPFGNIT 222
L +F P G T
Sbjct: 478 L--MFQPGGTPT 487
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ--------GIGFVCYETRQQAED 285
D ++L + NL D E L F FG + + + + G GFV + A D
Sbjct: 33 DLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAAD 92
Query: 286 AIKHMNG 306
A HM+G
Sbjct: 93 AKHHMDG 99
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 396 TCRRSRSIFI-CVRFIRKLDDDGTRSRYWALSVHVFYCIFGLLPGLVAN 253
+C S IF+ I KLD RS + +H+ YC F + L+ N
Sbjct: 350 SCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIHMSYCTFSSVKILLRN 398
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 61 MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
+QG + NPEN + +Y+SN+ D+ ++L FS FG I
Sbjct: 208 VQGNPVVAPAQHFNPEN-------VQRKIYVSNVSADIDPQKLLEFFSRFGEI 253
>At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing
protein contains Pfam profile PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain
Length = 210
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPF 210
PD + LY+ LP + + ++ +F PF
Sbjct: 108 PDVSNTLYVEGLPSNCSRREVSHIFRPF 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,088,258
Number of Sequences: 28952
Number of extensions: 230657
Number of successful extensions: 1020
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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