Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H03f
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing ... 33 0.094
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein... 32 0.22
At1g32190.1 68414.m03959 expressed protein 31 0.29
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 31 0.50
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 1.5
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta... 29 1.5
At2g33330.1 68415.m04085 33 kDa secretory protein-related contai... 29 2.0
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 28 2.7
At1g65295.1 68414.m07404 expressed protein 28 2.7
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo... 28 2.7
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 27 4.7
At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putat... 27 4.7
At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to ribo... 27 6.2
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 27 6.2
At1g03220.1 68414.m00300 extracellular dermal glycoprotein, puta... 27 6.2
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 27 8.2
At4g30940.1 68417.m04393 potassium channel tetramerisation domai... 27 8.2
At4g15250.1 68417.m02337 zinc finger (B-box type) family protein 27 8.2
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,... 27 8.2
>At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 658
Score = 33.1 bits (72), Expect = 0.094
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = -3
Query: 409 RSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGY 230
R+ +SV D S T R GC S + Y + VGCS C +
Sbjct: 422 RNSDSVQETGDDASKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNAF 481
Query: 229 GRSEG 215
GR +G
Sbjct: 482 GRKDG 486
>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
(SOL1) identical to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain; supporting cDNA
gi|7767426|gb|AF205142.1|AF205142
Length = 609
Score = 31.9 bits (69), Expect = 0.22
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -3
Query: 409 RSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGY 230
R+ +S+ +D S T R GC S + Y + VGCS C +
Sbjct: 391 RNSDSIIEVGEDASKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNAF 450
Query: 229 GRSEG 215
GR +G
Sbjct: 451 GRKDG 455
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 31.5 bits (68), Expect = 0.29
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Frame = +1
Query: 223 SCRSPCCNSICCSYSCTLRCTFCYSNRCGT-----SCCSSSGIL---CCFAILCWCCSNP 378
SC P C CS C C+ C T SCC + CC C C
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSC--- 362
Query: 379 ASGSLHSP-CSC--CIRC 423
G P CSC C++C
Sbjct: 363 -FGKPKCPKCSCWKCLKC 379
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Frame = +1
Query: 226 CRSPCCNSICC--SYSCTL-------------RCTFCYSNRCGTSCCSSSGILCCFAILC 360
C+ P C S CC ++ C+ +C C C S C SG CF+ LC
Sbjct: 343 CKKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSG---CFSWLC 399
Query: 361 WC 366
C
Sbjct: 400 CC 401
Score = 28.3 bits (60), Expect = 2.7
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +1
Query: 184 QGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSC-CSSSGIL-CCFAIL 357
Q I D STG CC S C SC+ C C C C G C L
Sbjct: 284 QEIRRRDESTG-------CCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTL 336
Query: 358 CWCCSNPASGSLHSPCSC 411
C S S S C C
Sbjct: 337 KGCFSCCKKPSCVSSCCC 354
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = -3
Query: 409 RSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGY 230
R+ +S+ D S T R GC S + Y + VGCS C +
Sbjct: 464 RNADSIMEASDDASKTPASARHKRGCNCKKSNCMKKYCECYQGGVGCSMNCRCEGCTNVF 523
Query: 229 GRSEG 215
GR +G
Sbjct: 524 GRKDG 528
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 379 ASGSL-HSPCSCCIRCRLPI 435
A GS+ H C CC+RCR PI
Sbjct: 1255 AYGSVWHPQCFCCLRCREPI 1274
>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 434
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 229 RSPCCNSICCSYSCTLRCTFCYS 297
RSP CNS CS + ++ C C+S
Sbjct: 83 RSPRCNSAVCSRAGSIACGTCFS 105
>At2g33330.1 68415.m04085 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 304
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 187 GIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAI 354
G S S TGL CR N+ C Y+C R CG + + + C+ +
Sbjct: 79 GTTSQTSVTGLFQCRGDLSNNDC--YNCVSRLPVLSGKLCGKTIAARVQLSGCYLL 132
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = -3
Query: 427 AGSVCSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKW 248
A V S S ++V W + S T R GC S + Y VGCS
Sbjct: 511 APKVVSTS-DTVIDLWVENSKTPASARHKRGCNCRKSGCSKKYCECFMMGVGCSSNCRCM 569
Query: 247 SCNRGYGRSEGRC 209
C +G + +C
Sbjct: 570 GCKNTFGHTNEQC 582
>At1g65295.1 68414.m07404 expressed protein
Length = 115
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 355 LCWCCSNPASGSLHSPCSCCIRCRLP 432
+C CC L SPC I C +P
Sbjct: 69 VCTCCGGAKGLCLPSPCCYAINCNIP 94
>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
3.1.27.1) {Arabidopsis thaliana}
Length = 222
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 232 YGRSEGRCCYQRTQCPAGDINLCSVWRN 149
Y S CCY +T PA D + +W N
Sbjct: 35 YCDSRHSCCYPQTGKPAADFGIHGLWPN 62
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 340 CCFAILCWCCSNPASGSLHSPCSCC---IRCRLPIWSSTS 450
C ++C CS+ GS + C CC ++ R+ ++ ++S
Sbjct: 699 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVFGASS 738
>At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putative
similar to SIAH2 protein [Brassica napus var. napus]
GI:7657878; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 224
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 244 CNRGYGRSEGRCCYQRTQCPAGDINLCSVWRNVLRYSLSVSHV 116
CN+ E C + R CP + N S + N+ ++ S +HV
Sbjct: 54 CNQS--SHEKVCKFVRCSCPVSNCNYVSSYSNLKSHACSTAHV 94
>At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to
ribonuclease SP:P42813 Ribonuclease 1 precursor (EC
3.1.27.1) {Arabidopsis thaliana}, GI:561998 from
[Arabidopsis thaliana]
Length = 230
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 232 YGRSEGRCCYQRTQCPAGDINLCSVWRN 149
Y ++ +CCY + PA D + +W N
Sbjct: 43 YCDTQKKCCYPNSGKPAADFGIHGLWPN 70
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -2
Query: 425 RQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVPH 303
+Q++ Q+Q + ++ +Q QH +Q +MP L+QQ+ H
Sbjct: 686 QQQLHQQQQQQQQIQQQQQQQQH--LQQQQMPQLQQQQQQH 724
>At1g03220.1 68414.m00300 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 433
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 229 RSPCCNSICCSYSCTLRCTFCYS-NRCGTSCCSSSGI 336
+SP CNS CS + + C C+S R G S + GI
Sbjct: 82 QSPRCNSAVCSRAGSTSCGTCFSPPRPGCSNNTCGGI 118
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 175 YRQQGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILC 342
+R Q + S SS L+S R +S S S CY+ + T S G++C
Sbjct: 108 FRAQSLGSIFSSVHLKSTREISSSSSSSSASSITYHVTCYTQQRMTISPSVHGLIC 163
>At4g30940.1 68417.m04393 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 441
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -3
Query: 181 GDINLCSVWRNVLRYSLSVSHVGWSNQRSSGYCWNSCDCTRFSSNYKGSSDEY 23
G + L S LRY VSH S+G S D F+S KG S+EY
Sbjct: 184 GGMGLFSSSSGELRYKFQVSHDNQVKSYSAGALSFSPDSKIFTS-CKGRSNEY 235
>At4g15250.1 68417.m02337 zinc finger (B-box type) family protein
Length = 330
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 277 RCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSCCIRCRL 429
RC FC + + C S S LC + +NP S H+ C +C L
Sbjct: 4 RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLS-QRHTRSLLCEKCSL 53
>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase SP:P45582 from
[Asparagus officinalis]
Length = 815
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Frame = +1
Query: 301 RCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSCCI---------RCRLPIWSST 447
+C T S + F C + + GS HSP S + RC +P+WS T
Sbjct: 738 QCPTGRKISKILFASFGTPNGSCGSYSIGSCHSPNSLAVVQKACLKKSRCSVPVWSKT 795
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,014,130
Number of Sequences: 28952
Number of extensions: 148708
Number of successful extensions: 668
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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