Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301F07f
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49140.1 68414.m05509 NADH-ubiquinone oxidoreductase-related ... 31 0.18
At3g18410.1 68416.m02341 NADH-ubiquinone oxidoreductase-related ... 31 0.23
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 30 0.31
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 1.6
At2g15800.1 68415.m01811 expressed protein and genefinder 28 1.6
At4g27510.1 68417.m03951 expressed protein ; expression support... 27 2.9
At2g22250.2 68415.m02642 aminotransferase class I and II family ... 27 2.9
At2g41920.1 68415.m05186 protein kinase family protein contains ... 27 3.8
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put... 26 5.0
At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase... 26 6.7
At5g39865.1 68418.m04835 glutaredoxin family protein 25 8.8
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 25 8.8
>At1g49140.1 68414.m05509 NADH-ubiquinone oxidoreductase-related
similar to NADH-ubiquinone oxidoreductase 12 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-12KD) (CI-12KD).
(Swiss-Prot:Q03015) [Neurospora crassa]
Length = 107
Score = 31.1 bits (67), Expect = 0.18
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 140 DVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSA 304
D V E R++ + E ILR++ + C E +H KCR L +Y A
Sbjct: 26 DPVAMVEMREHIVREKWIHIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDA 80
>At3g18410.1 68416.m02341 NADH-ubiquinone oxidoreductase-related
similar to NADH-ubiquinone oxidoreductase 12 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-12KD) (CI-12KD).
(Swiss-Prot:Q03015) [Neurospora crassa]
Length = 106
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 140 DVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKY 295
D V E R++ + E ILR++ + C E +H KCR L +Y
Sbjct: 26 DPVAMVEMREHIVREKWIQIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQY 77
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 30.3 bits (65), Expect = 0.31
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +2
Query: 44 FRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQ 223
F E V E +K+Y +N R P D+ DDD+ D +F +D E IL++
Sbjct: 81 FLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGD-----RFSVAYNLDREFGPILKE 135
Query: 224 RYEDCMMYEQPDHATKCRSL 283
+ CM + P+ +K L
Sbjct: 136 HMQYCMSH--PEEMSKLSKL 153
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.9 bits (59), Expect = 1.6
Identities = 28/94 (29%), Positives = 40/94 (42%)
Frame = +2
Query: 32 PVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILS 211
PV W ET E + P + P+ ++ DDDVV E N + DR
Sbjct: 1249 PVEWNEETAEEQVGAESPALVTDDTGEPSSER-KDDDVVNFTEEN---EWDR-------- 1296
Query: 212 ILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEA 313
+LR R E + + +W+KY+S EEA
Sbjct: 1297 LLRMRLEFPLSLSSASWLWSWQHIWEKYQSEEEA 1330
>At2g15800.1 68415.m01811 expressed protein and genefinder
Length = 231
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 236 CMMYEQPDHATKCRSLWDKYKSAEEA 313
C E+PDHA WD Y AE +
Sbjct: 183 CYDVERPDHAMDTDDEWDAYDQAERS 208
>At4g27510.1 68417.m03951 expressed protein ; expression supported
by MPSS
Length = 677
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 89 YHQNYR-RVPTIDQCYDDDVVCDFEANAQFKR-DRAVDSEILSILRQRYEDCMMYEQPDH 262
+H N + R +D DDV C F ++ F DR+++S ++ +Q+ E C +E +
Sbjct: 66 HHWNIKFRGEKVDLINFDDV-C-FLSDVLFTELDRSLESLFATLFKQKAETCPTFESTED 123
Query: 263 ATKCRSLWDK 292
+ + SL+ K
Sbjct: 124 SIELASLFLK 133
>At2g22250.2 68415.m02642 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 475
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 13 LQYSRC-SGNMVPRNCCRTKPEEVPLVSSKL 102
L +S C SGNM R C KP + +SS +
Sbjct: 38 LSFSYCKSGNMSSRICAMAKPNDAETLSSSV 68
>At2g41920.1 68415.m05186 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 318
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 56 VVEPNQKKYPWYHQNYRRVPTIDQCYD 136
V+E +K PW+H NY + + +CY+
Sbjct: 215 VLEMYTRKKPWWHTNY-ELEELMKCYE 240
>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 953
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 289 VPKRPAFSCMVWLLIHHAIFIALP 218
+P+ P F ++LL H ++F ++P
Sbjct: 1 MPRNPRFCFFLFLLFHSSLFFSIP 24
>At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase 4 [Lycopersicon
esculentum] GI:2459815; contains Pfam profile PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 394
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 7 CSLQYSRCSGNMVPRNC 57
C + R SG MVPRNC
Sbjct: 377 CRNAHGRASGVMVPRNC 393
>At5g39865.1 68418.m04835 glutaredoxin family protein
Length = 390
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 89 YHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYEDC 238
+H+N + +D D+V F+ K + L +R+ YEDC
Sbjct: 195 FHENVKSSCRVDDLDPPDIVSRFKRKTLGKERVVLYFTSLRGIRKTYEDC 244
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 128 CYDDDVVCDFEANAQFKRDRAVDSEILSILRQRY 229
C +D++ N + ++ D +++SI R+RY
Sbjct: 205 CAEDEIAYKKTQNCEIEQHTLPDGQVISIGRERY 238
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,350,244
Number of Sequences: 28952
Number of extensions: 105971
Number of successful extensions: 312
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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