Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F01f
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    29   2.4  
At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger) fa...    27   5.4  
At5g39020.1 68418.m04722 protein kinase family protein contains ...    27   9.5  
At4g16560.1 68417.m02505 heat shock protein-related contains sim...    27   9.5  
At4g16550.1 68417.m02504 heat shock protein-related contains sim...    27   9.5  

>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 206  NKICETFSFEKHLSDETFLSEFEFENNVNVLMDQVYISIEIQE 334
            NK+ + +++EK    E FL    +EN + +L D+    IE ++
Sbjct: 1180 NKLQQLYAYEKSRKPEKFLDAVYYENALVLLPDEDIYRIECEQ 1222


>At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 212

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 168 YLVMCFIEMFIFLSVSVASNYK*LMRVSFLAFSLLVDNANAFSNFSD 28
           Y +   +   + +S  + S+Y    R S L FS    NANA ++FSD
Sbjct: 28  YSIAIALGFLVLISTIILSSYI-CCRASRLRFSASAANANANASFSD 73


>At5g39020.1 68418.m04722 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 813

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 300 INTFTLFSNSNSDKNVSSLKCFSNENVSQILF*FIMLLNVT 178
           +N FTL  N N+D  V +    SN  + + +      LN+T
Sbjct: 127 VNGFTLLRNFNADSTVQASIPLSNSLIKEFIIPVHQTLNLT 167


>At4g16560.1 68417.m02505 heat shock protein-related contains
           similarity to SWISS-PROT:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 532

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 252 SSLKCFSNENVSQILF*FIMLLNV 181
           +SL+CFS  NVS I   F++L+ +
Sbjct: 177 TSLRCFSIVNVSDIFHGFVLLIPI 200


>At4g16550.1 68417.m02504 heat shock protein-related contains
           similarity to Swiss-Prot:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 743

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 252 SSLKCFSNENVSQILF*FIMLLNV 181
           +SL+CFS  NVS I   F++L+ +
Sbjct: 331 TSLRCFSIVNVSDIFHGFVLLIPI 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,735,517
Number of Sequences: 28952
Number of extensions: 121593
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)