Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E09f
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04830.1 68414.m00479 RabGAP/TBC domain-containing protein lo...    30   0.77 
At1g14130.1 68414.m01670 2-oxoglutarate-dependent dioxygenase, p...    27   5.4  
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi...    27   7.1  

>At1g04830.1 68414.m00479 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 448

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 227 IILNHLPTNYTVLFLCRKMKKTQKINYRSTKMKMPSKLMWSMMLKLGY 84
           ++L +LP   ++     K K++Q  +Y+   +  PS++ W M+   G+
Sbjct: 134 LLLGYLPPERSLWSTELKQKRSQYKHYKDELLTSPSEITWKMVRSKGF 181


>At1g14130.1 68414.m01670 2-oxoglutarate-dependent dioxygenase,
           putative similar to adventitious rooting related
           oxygenase ARRO-1 from Malus x domestica, gi|3492806;
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 308

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 421 HPFQSKDSKECKTIQVVELTSQDDILIPPTQFTDTKDPKVY 299
           H  Q K++    +I    L   D  L PP++F D + P++Y
Sbjct: 235 HRVQCKEATMRYSIASFLLGPMDTDLEPPSEFVDAEHPRLY 275


>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 834

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 427 QXHPFQSKDSKECKTIQVVELTSQDDILI 341
           + H F SKD   CK  Q+ E+   DD+L+
Sbjct: 802 EVHIFLSKDKSHCKANQIYEVL--DDLLV 828


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,188
Number of Sequences: 28952
Number of extensions: 160649
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)