Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E08f
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17690.1 68414.m02190 expressed protein                             28   2.8  
At5g59810.1 68418.m07499 subtilase family protein subtilisin-lik...    27   8.6  
At1g58350.1 68414.m06637 expressed protein contains Pfam profile...    27   8.6  
At1g09980.1 68414.m01126 expressed protein contains Pfam profile...    27   8.6  

>At1g17690.1 68414.m02190 expressed protein
          Length = 754

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 314 KQLHLNGAARFPEPSLRIKNLVSPYITSLFPNKC 415
           + L+L+G ARF   S+ + + ++P + SLF   C
Sbjct: 524 RPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHC 557


>At5g59810.1 68418.m07499 subtilase family protein subtilisin-like
           protease AIR3, Arabidopsis thaliana, EMBL:AF098632
          Length = 778

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 293 KRLMIYQKQLHLNGAARFPEPSLRIKNLVSPYITSLFPNK 412
           K  + Y  + H+NG A   + +   +    P + S+FPNK
Sbjct: 82  KEAIFYSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNK 121


>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           supporting cDNA gi|6520166|dbj|AB028199.1|
          Length = 794

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 336 LHGFQSHHLELKI 374
           +HGFQ HHL+L++
Sbjct: 518 VHGFQGHHLDLRL 530


>At1g09980.1 68414.m01126 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           non-consensus GC donor splice site at exon boundary
           144764
          Length = 802

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 336 LHGFQSHHLELKI 374
           +HGFQ HHL+L++
Sbjct: 526 VHGFQGHHLDLRL 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,935,246
Number of Sequences: 28952
Number of extensions: 163154
Number of successful extensions: 325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)