Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E07f
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) ...    31   0.27 
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    30   0.82 
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    30   0.82 
At1g03850.2 68414.m00367 glutaredoxin family protein contains IN...    30   0.82 
At1g03850.1 68414.m00366 glutaredoxin family protein contains IN...    30   0.82 
At3g52130.1 68416.m05722 protease inhibitor/seed storage/lipid t...    27   5.8  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    27   5.8  
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr...    27   7.6  
At2g46930.1 68415.m05862 pectinacetylesterase, putative similar ...    27   7.6  

>At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 2)
           identical to SP|Q9T0P4 Ferredoxin-dependent glutamate
           synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT
           2) {Arabidopsis thaliana}
          Length = 1629

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -1

Query: 402 SAYKNLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRINS 232
           + +++L++ G+  SAS+      C    + AC +G   A ++C H++L   R WR+++
Sbjct: 736 AVHQHLIQNGLRMSASIIADTAQCFSTHHFACLIG-YGASAICPHLALETCRQWRLSN 792


>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -1

Query: 402 SAYKNLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRINS 232
           + +++L++ G+  SAS+      C    + AC VG   A +VC +++L   R WR+++
Sbjct: 760 AVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLSN 816


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -1

Query: 402 SAYKNLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRINS 232
           + +++L++ G+  SAS+      C    + AC VG   A +VC +++L   R WR+++
Sbjct: 734 AVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLSN 790


>At1g03850.2 68414.m00367 glutaredoxin family protein contains
           INTERPRO Domain IPR002109, Glutaredoxin
           (thioltransferase)
          Length = 150

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 219 SSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPVLGNIGSRESTNRQN 52
           + R +N  ++   +  F  +RR CC G + +RL     + PV+  IG  ++ N  N
Sbjct: 52  NKRSSNLVVMENAVVVF--ARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDNNNYDN 105


>At1g03850.1 68414.m00366 glutaredoxin family protein contains
           INTERPRO Domain IPR002109, Glutaredoxin
           (thioltransferase)
          Length = 159

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 219 SSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPVLGNIGSRESTNRQN 52
           + R +N  ++   +  F  +RR CC G + +RL     + PV+  IG  ++ N  N
Sbjct: 52  NKRSSNLVVMENAVVVF--ARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDNNNYDN 105


>At3g52130.1 68416.m05722 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           cysteine-rich 5B protein - Lycopersicon esculentum,
           PIR2:S39552 [GI:415833]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 125

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 296 QPTPHALLPKT-IQKCTRTFTDALA-LIPTRS 385
           QP P  +LP+  +  C+RTF  AL  LIP R+
Sbjct: 33  QPPPPPMLPEEEVGGCSRTFFSALVQLIPCRA 64


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 198 GLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPVL 91
           G++   LC+       CC+G  C+   GI  L PV+
Sbjct: 231 GMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVI 266


>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein kinesin,
           Syncephalastrum racemosum, AJ225894
          Length = 941

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 317 LPKTIQKCTRTFTDALALIPTRSKFLYADN 406
           L K +++C  +F +A     TRSKFL  +N
Sbjct: 485 LEKRLRECENSFAEAEKNAVTRSKFLEKEN 514


>At2g46930.1 68415.m05862 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 416

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 219 SSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPVLGNIGSRESTNRQN 52
           S  GAN  LI      +C +RR C F    RR S   ++E VL   G   + + +N
Sbjct: 82  SGSGANRWLIQLEGGGWCNTRRSCIFRKTTRRGSS-NHMEKVLAFTGILSNKSNEN 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,304,395
Number of Sequences: 28952
Number of extensions: 144398
Number of successful extensions: 302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)