Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D12f
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P...   200   3e-52
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P...   200   6e-52
At2g36960.2 68415.m04533 myb family transcription factor contain...    31   0.61 
At2g36960.1 68415.m04532 myb family transcription factor contain...    31   0.61 
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    29   2.5  
At1g22160.1 68414.m02770 senescence-associated protein-related s...    29   2.5  

>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
           (PCNA2) identical to SP|Q9ZW35 Proliferating cell
           nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 264

 Score =  200 bits (489), Expect = 3e-52
 Identities = 88/133 (66%), Positives = 112/133 (84%)
 Frame = +2

Query: 113 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 292
           M E RL++ S+LKKVLEA+KDL+  A FDC   G  LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 293 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 472
           RCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D +D VTF+FESP Q+K++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 120

Query: 473 LDLEHLGIPETEY 511
           +D EHLGIP+ EY
Sbjct: 121 IDSEHLGIPDAEY 133


>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
           (PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
           nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 263

 Score =  200 bits (487), Expect = 6e-52
 Identities = 88/133 (66%), Positives = 111/133 (83%)
 Frame = +2

Query: 113 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 292
           M E RL++ S+LKKVLE+IKDL+  A FDC   G  LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 293 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 472
           RCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D  D VTF+FESP Q+K++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMD 120

Query: 473 LDLEHLGIPETEY 511
           +D EHLGIP+ EY
Sbjct: 121 IDSEHLGIPDAEY 133


>At2g36960.2 68415.m04533 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 741

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 164 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 286
           +I DLL++   D D +G+   A + SH  L  +   +D FD
Sbjct: 529 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 569


>At2g36960.1 68415.m04532 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 743

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 164 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 286
           +I DLL++   D D +G+   A + SH  L  +   +D FD
Sbjct: 531 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 571


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +2

Query: 29   VCKLGVAACLALLLIFNKIIEVIH*NINMFEAR----LLRSSILKKVLEAIKDLLTQATF 196
            VCK   AA   +++     +EV+   +N F+++      +  IL+  +E ++D L   T 
Sbjct: 1022 VCKQAEAATAEVIVCLQNELEVLQKEVNDFQSKENVTEKQVEILETQMEELQDKLRDTTM 1081

Query: 197  DCDDNGIQLQAMD 235
            D +    QL+  D
Sbjct: 1082 DNEQLQEQLRGKD 1094


>At1g22160.1 68414.m02770 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 147

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 359 GDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEH 487
           G +    IK   +   + F    P++++ SD++++L+N+D EH
Sbjct: 4   GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVD-EH 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,196,095
Number of Sequences: 28952
Number of extensions: 192162
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)